Os10g0167500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os10g0167500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.85 | 0.443 | 6.83 | 0.172 | 0.771 | 1.63 | -0.399 | 1.03 | -0.465 | 9.11 | 18.58 | 270 | -- | -- |
| 89.86 | 0.441 | 6.84 | 0.0256 | 0.766 | 1.71 | -0.375 | -- | -0.498 | 8.94 | 19.06 | 258 | -- | -- |
| 89.39 | 0.44 | 6.83 | 0.159 | 0.784 | 1.64 | -- | 1.06 | -0.47 | 9.08 | 18.6 | 278 | -- | -- |
| 90.33 | 0.443 | 6.85 | -0.0347 | 0.771 | 1.68 | -- | -- | -0.523 | 8.97 | 19 | 260 | -- | -- |
| 101.02 | 0.471 | 6.87 | 0.0776 | -- | 1.77 | -- | 0.58 | -0.506 | -- | 18.6 | 278 | -- | -- |
| 135.07 | 0.545 | 6.8 | 0.375 | 0.755 | -- | -0.248 | -- | -0.233 | 12.1 | -- | -- | -- | -- |
| 135.33 | 0.545 | 6.8 | 0.366 | 0.756 | -- | -- | -- | -0.234 | 12.2 | -- | -- | -- | -- |
| 101.39 | 0.471 | 6.88 | -0.0126 | -- | 1.77 | -- | -- | -0.532 | -- | 19 | 260 | -- | -- |
| 90.33 | 0.443 | 6.85 | -- | 0.778 | 1.67 | -- | -- | -0.518 | 9.01 | 19 | 269 | -- | -- |
| 171.3 | 0.612 | 6.81 | 0.342 | -- | -- | -- | -- | -0.245 | -- | -- | -- | -- | -- |
| 138.86 | 0.551 | 6.81 | -- | 0.751 | -- | -- | -- | -0.275 | 12.1 | -- | -- | -- | -- |
| 101.27 | 0.47 | 6.88 | -- | -- | 1.81 | -- | -- | -0.53 | -- | 18.8 | 9 | -- | -- |
| 174.37 | 0.616 | 6.82 | -- | -- | -- | -- | -- | -0.283 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.88 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 7 | 85.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 14 | 86.01 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 20 | 86.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 84 | 88.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 108 | 88.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 128 | 89.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 14 |
| 130 | 89.19 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 136 | 89.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 139 | 89.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 166 | 89.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 182 | 89.69 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 184 | 89.70 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 190 | 89.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 222 | 90.10 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 286 | 90.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 365 | 91.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 398 | 91.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 443 | 91.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 460 | 91.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 22 |
| 467 | 91.64 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 567 | 92.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 573 | 92.02 | temperature | 15 | 1440 | > th | dose dependent | rect. | 14 | 16 |
| 591 | 92.06 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 597 | 92.07 | temperature | 15 | 1440 | > th | dose dependent | sin | 14 | NA |
| 648 | 92.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 661 | 92.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 675 | 92.18 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 690 | 92.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 712 | 92.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 736 | 92.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 759 | 92.29 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 1000 | 92.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |