BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0159300 Os10g0159300|AK121327
         (49 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0159300  Conserved hypothetical protein                       97   3e-21
Os02g0501350  Conserved hypothetical protein                       72   7e-14
Os09g0388000  Conserved hypothetical protein                       71   2e-13
Os06g0363350  Conserved hypothetical protein                       65   1e-11

>Os10g0159300 Conserved hypothetical protein
          Length = 49

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/49 (100%), Positives = 49/49 (100%)

Query: 1  SLFRYLLLICLREGMGLATLLHDMISLSHDYCNMLIGLLVFRHNGLIKH 49
          SLFRYLLLICLREGMGLATLLHDMISLSHDYCNMLIGLLVFRHNGLIKH
Sbjct: 1  SLFRYLLLICLREGMGLATLLHDMISLSHDYCNMLIGLLVFRHNGLIKH 49



>Os02g0501350 Conserved hypothetical protein
          Length = 64

 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 39/47 (82%)

Query: 3  FRYLLLICLREGMGLATLLHDMISLSHDYCNMLIGLLVFRHNGLIKH 49
          F+ L + CL EGMGLAT  HDMISLSHDYCN+LI + VFRHNGLIK+
Sbjct: 18 FQVLAVTCLHEGMGLATQSHDMISLSHDYCNILIRIFVFRHNGLIKY 64



>Os09g0388000 Conserved hypothetical protein
          Length = 58

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 38/47 (80%)

Query: 3  FRYLLLICLREGMGLATLLHDMISLSHDYCNMLIGLLVFRHNGLIKH 49
          F+   + C  EGMGLATL HDM SLSHDYCNMLI LLVFRHNGLIK+
Sbjct: 12 FQVHAMTCFHEGMGLATLSHDMNSLSHDYCNMLIRLLVFRHNGLIKY 58



>Os06g0363350 Conserved hypothetical protein
          Length = 59

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 37/47 (78%)

Query: 3  FRYLLLICLREGMGLATLLHDMISLSHDYCNMLIGLLVFRHNGLIKH 49
          F+ L + CL EGMGLAT  HDMISL H+YCNMLI LLVF +NGLI +
Sbjct: 13 FQVLAVTCLYEGMGLATQSHDMISLRHEYCNMLIRLLVFIYNGLINY 59



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.337    0.152    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,517,964
Number of extensions: 38244
Number of successful extensions: 95
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 4
Length of query: 49
Length of database: 17,035,801
Length adjustment: 22
Effective length of query: 27
Effective length of database: 15,887,093
Effective search space: 428951511
Effective search space used: 428951511
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 149 (62.0 bits)