Os09g0388000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0388000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 368.1 | 0.901 | 6.75 | -2.26 | 0.78 | 2 | 0.379 | -2.9 | -2.16 | 16.3 | 19.19 | 6068 | -- | -- |
| 356.58 | 0.879 | 6.7 | -2.1 | 0.86 | 2.71 | 0.388 | -- | -2.27 | 16.1 | 13.9 | 11259 | -- | -- |
| 356.46 | 0.879 | 6.71 | -2.2 | 0.864 | 2.77 | -- | -0.265 | -2.32 | 16.1 | 11 | 11460 | -- | -- |
| 356.49 | 0.879 | 6.7 | -2.13 | 0.861 | 2.79 | -- | -- | -2.31 | 16.1 | 13.39 | 11457 | -- | -- |
| 392.46 | 0.923 | 6.74 | -2.33 | -- | 2.73 | -- | -0.46 | -2.4 | -- | 13.51 | 11960 | -- | -- |
| 483.76 | 1.03 | 6.49 | -0.362 | 0.773 | -- | 0.317 | -- | -1.37 | 16.4 | -- | -- | -- | -- |
| 483.99 | 1.03 | 6.49 | -0.359 | 0.774 | -- | -- | -- | -1.37 | 16.3 | -- | -- | -- | -- |
| 392.64 | 0.923 | 6.71 | -2.2 | -- | 2.73 | -- | -- | -2.36 | -- | 12.95 | 11961 | -- | -- |
| 403.57 | 0.936 | 6.59 | -- | 0.805 | 1.44 | -- | -- | -1.81 | 15.9 | 25.3 | 9117 | -- | -- |
| 516.25 | 1.06 | 6.49 | -0.39 | -- | -- | -- | -- | -1.39 | -- | -- | -- | -- | -- |
| 487.39 | 1.03 | 6.48 | -- | 0.781 | -- | -- | -- | -1.33 | 16.3 | -- | -- | -- | -- |
| 438.87 | 0.976 | 6.58 | -- | -- | 1.42 | -- | -- | -1.82 | -- | 25.73 | 9119 | -- | -- |
| 520.26 | 1.06 | 6.48 | -- | -- | -- | -- | -- | -1.35 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 350.08 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 2 | 350.57 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 3 | 350.97 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 13 | 353.00 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 14 | 353.18 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 30 | 354.20 | temperature | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 31 | 354.25 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 79 | 355.29 | temperature | 30 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 128 | 355.74 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 242 | 356.66 | temperature | 15 | 14400 | > th | dose dependent | sin | 18 | NA |
| 282 | 356.87 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 359 | 357.24 | wind | 5 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 372 | 357.30 | temperature | 30 | 14400 | < th | dose dependent | sin | 18 | NA |
| 412 | 357.46 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 522 | 357.88 | wind | 5 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 566 | 358.02 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 654 | 358.31 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 678 | 358.39 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 6 |
| 762 | 358.62 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 784 | 358.68 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 823 | 358.76 | temperature | 10 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 853 | 358.82 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |
| 917 | 358.96 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 960 | 359.06 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |