BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0140200 Os10g0140200|AK069822
(1004 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0140200 Glycoside hydrolase, family 38 domain containi... 2037 0.0
Os11g0525600 Similar to Alpha-mannosidase 1210 0.0
Os06g0245700 Similar to Glycosyl hydrolase 271 2e-72
AK072146 100 6e-21
AK059935 84 5e-16
>Os10g0140200 Glycoside hydrolase, family 38 domain containing protein
Length = 1004
Score = 2037 bits (5277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 976/981 (99%), Positives = 976/981 (99%)
Query: 24 FSGYNTSAGAVAGKLNVHLVPHSHDDVGWLKTIDQYFVGTNNSIQGACVMNTLDSVVDAL 83
FSGYNTSAGAVAGKLNVHLVPHSHDDVGWLKTIDQYFVGTNNSIQGACVMNTLDSVVDAL
Sbjct: 24 FSGYNTSAGAVAGKLNVHLVPHSHDDVGWLKTIDQYFVGTNNSIQGACVMNTLDSVVDAL 83
Query: 84 ILDPARKFVFAEQAFFQRWWAEKSPKIQAIVHKLVDSGQLEFINGGWCMHDEAAVHYIDM 143
ILDPARKFVFAEQAFFQRWWAEKSPKIQAIVHKLVDSGQLEFINGGWCMHDEAAVHYIDM
Sbjct: 84 ILDPARKFVFAEQAFFQRWWAEKSPKIQAIVHKLVDSGQLEFINGGWCMHDEAAVHYIDM 143
Query: 144 IDQTTLGHRVIKKQFNKIPRAGWQIDPFGHSAVQGYLLGAELGFDSMHFARIDYQDRAKR 203
IDQTTLGHRVIKKQFNKIPRAGWQIDPFGHSAVQGYLLGAELGFDSMHFARIDYQDRAKR
Sbjct: 144 IDQTTLGHRVIKKQFNKIPRAGWQIDPFGHSAVQGYLLGAELGFDSMHFARIDYQDRAKR 203
Query: 204 KGDKGLEVIWRGSRTFGSSSQIFTNAFPVHYSPPDGFGFEIFDDFVPVQDDMLLFDYNLK 263
KGDKGLEVIWRGSRTFGSSSQIFTNAFPVHYSPPDGFGFEIFDDFVPVQDDMLLFDYNLK
Sbjct: 204 KGDKGLEVIWRGSRTFGSSSQIFTNAFPVHYSPPDGFGFEIFDDFVPVQDDMLLFDYNLK 263
Query: 264 ERVNDFVAAALKQANVTRTNHIMWTMGDDFNYQYAESWFRNMDRLINYVNKDGRVHALYS 323
ERVNDFVAAALKQANVTRTNHIMWTMGDDFNYQYAESWFRNMDRLINYVNKDGRVHALYS
Sbjct: 264 ERVNDFVAAALKQANVTRTNHIMWTMGDDFNYQYAESWFRNMDRLINYVNKDGRVHALYS 323
Query: 324 TPSIYTDAKHASNESWPLKYDDYFPYADAKNAYWTGYFTSRPTFKRYIRMISGYYLAARQ 383
TPSIYTDAKHASNESWPLKYDDYFPYADAKNAYWTGYFTSRPTFKRYIRMISGYYLAARQ
Sbjct: 324 TPSIYTDAKHASNESWPLKYDDYFPYADAKNAYWTGYFTSRPTFKRYIRMISGYYLAARQ 383
Query: 384 LEFLVGRSSLGLFTSSLEDPLGIAQHHDAVSGTAKQHTTDDYSKRLAIGVSQVEKGVNTA 443
LEFLVGRSSLGLFTSSLEDPLGIAQHHDAVSGTAKQHTTDDYSKRLAIGVSQVEKGVNTA
Sbjct: 384 LEFLVGRSSLGLFTSSLEDPLGIAQHHDAVSGTAKQHTTDDYSKRLAIGVSQVEKGVNTA 443
Query: 444 LSCLTSSKGTCTATKFSQCQLLNISYCPSTEEGISSAKSLVIVVYNPLGWERSDFVRVPV 503
LSCLTSSKGTCTATKFSQCQLLNISYCPSTEEGISSAKSLVIVVYNPLGWERSDFVRVPV
Sbjct: 444 LSCLTSSKGTCTATKFSQCQLLNISYCPSTEEGISSAKSLVIVVYNPLGWERSDFVRVPV 503
Query: 504 NDANLIVKTSDGTSLESQLVEVDIVTARLRKLYIKAYLGITSDKPPKYWLVFQASVPPLG 563
NDANLIVKTSDGTSLESQLVEVDIVTARLRKLYIKAYLGITSDKPPKYWLVFQASVPPLG
Sbjct: 504 NDANLIVKTSDGTSLESQLVEVDIVTARLRKLYIKAYLGITSDKPPKYWLVFQASVPPLG 563
Query: 564 WNTYFISKSTGTGSNGMGYVSTMVSPSNDTIEIGPGPLKMSYSSKSGQLKRMFNSISAVD 623
WNTYFISKSTGTGSNGMGYVSTMVSPSNDTIEIGPGPLKMSYSSKSGQLKRMFNSISAVD
Sbjct: 564 WNTYFISKSTGTGSNGMGYVSTMVSPSNDTIEIGPGPLKMSYSSKSGQLKRMFNSISAVD 623
Query: 624 LPIQQSFLWYASSTGDSEDSQASGAYIFRPNRTTPTIVSGMAPLKVIHGPLVDEVHQQFS 683
LPIQQSFLWYASSTGDSEDSQASGAYIFRPNRTTPTIVSGMAPLKVIHGPLVDEVHQQFS
Sbjct: 624 LPIQQSFLWYASSTGDSEDSQASGAYIFRPNRTTPTIVSGMAPLKVIHGPLVDEVHQQFS 683
Query: 684 SWIYQVTRLYKNKEHAEVEYTIGPIPVXXXXXIGKEVVTRLTTNMATNKIFYTDSNGRDF 743
SWIYQVTRLYKNKEHAEVEYTIGPIPV IGKEVVTRLTTNMATNKIFYTDSNGRDF
Sbjct: 684 SWIYQVTRLYKNKEHAEVEYTIGPIPVDDDDDIGKEVVTRLTTNMATNKIFYTDSNGRDF 743
Query: 744 LERVRNHRDDWDLNLSQPVAGNYYPVNQGIYVADGKYELSVLVDHAVGASSIQDGQIEVM 803
LERVRNHRDDWDLNLSQPVAGNYYPVNQGIYVADGKYELSVLVDHAVGASSIQDGQIEVM
Sbjct: 744 LERVRNHRDDWDLNLSQPVAGNYYPVNQGIYVADGKYELSVLVDHAVGASSIQDGQIEVM 803
Query: 804 LHRRLSADDGRGVGEPLNEVVCVDQKCDGLVARATYYINVNKKGHGAHWRRTYSQQVYSP 863
LHRRLSADDGRGVGEPLNEVVCVDQKCDGLVARATYYINVNKKGHGAHWRRTYSQQVYSP
Sbjct: 804 LHRRLSADDGRGVGEPLNEVVCVDQKCDGLVARATYYINVNKKGHGAHWRRTYSQQVYSP 863
Query: 864 FLVAFAHEDERSWKSNNIAKASTVEGNYSLPDNVAIITLQSLDDGTTLLRLAHLFQAQED 923
FLVAFAHEDERSWKSNNIAKASTVEGNYSLPDNVAIITLQSLDDGTTLLRLAHLFQAQED
Sbjct: 864 FLVAFAHEDERSWKSNNIAKASTVEGNYSLPDNVAIITLQSLDDGTTLLRLAHLFQAQED 923
Query: 924 TQYSVMAKVELRKLFGKRIIKDLTETSLSANQKKSEMKKLNWRVTGESKTDPAPLKGGPV 983
TQYSVMAKVELRKLFGKRIIKDLTETSLSANQKKSEMKKLNWRVTGESKTDPAPLKGGPV
Sbjct: 924 TQYSVMAKVELRKLFGKRIIKDLTETSLSANQKKSEMKKLNWRVTGESKTDPAPLKGGPV 983
Query: 984 DSHALVVELGPMEIRTFLLKF 1004
DSHALVVELGPMEIRTFLLKF
Sbjct: 984 DSHALVVELGPMEIRTFLLKF 1004
>Os11g0525600 Similar to Alpha-mannosidase
Length = 1020
Score = 1210 bits (3130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/988 (58%), Positives = 735/988 (74%), Gaps = 16/988 (1%)
Query: 27 YNTSAGAVAGKLNVHLVPHSHDDVGWLKTIDQYFVGTNNSIQGACVMNTLDSVVDALILD 86
YNTSAG V GKLNVH+VPH+HDDVGWLKT+DQY+VG+NNSIQGACV N LDS+V AL+ D
Sbjct: 30 YNTSAGVVGGKLNVHVVPHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSLVPALLKD 89
Query: 87 PARKFVFAEQAFFQRWWAEKSPKIQAIVHKLVDSGQLEFINGGWCMHDEAAVHYIDMIDQ 146
RKFV+ EQAFFQRWW ++S I+ IV L+ +G+LE INGG CMHDEA VHYIDMIDQ
Sbjct: 90 ENRKFVYVEQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCMHDEATVHYIDMIDQ 149
Query: 147 TTLGHRVIKKQFNKIPRAGWQIDPFGHSAVQGYLLGAELGFDSMHFARIDYQDRAKRKGD 206
TTLGHR IK++F +IPR GWQIDPFGHSAVQ YLLG E+GFD+ +F RIDYQDR RKG
Sbjct: 150 TTLGHRFIKEEFGQIPRIGWQIDPFGHSAVQAYLLGTEVGFDAFYFFRIDYQDRDTRKGT 209
Query: 207 KGLEVIWRGSRTFGSSSQIFTNAFPVHYSPPDG-FGFEIFDDFVPVQDDMLLFDYNLKER 265
K LEV+WRGS+TFGSS+ IF FP +Y PP G F FE+ D VQDD LLFDYN+++R
Sbjct: 210 KELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSPIVQDDPLLFDYNVEQR 269
Query: 266 VNDFVAAALKQANVTRTNHIMWTMGDDFNYQYAESWFRNMDRLINYVNKDGRVHALYSTP 325
V+DFVAAA+ QAN+TRTNH+M+TMG DF YQYAESWFR MD+LI+YVNKDGRV+ALYSTP
Sbjct: 270 VDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVNKDGRVNALYSTP 329
Query: 326 SIYTDAKHASNESWPLKYDDYFPYADAKNAYWTGYFTSRPTFKRYIRMISGYYLAARQLE 385
SIYTDAKHA N WPLK +D+FPYAD NAYWTGYFTSRP KRY+R++SGYYLAARQLE
Sbjct: 330 SIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLE 389
Query: 386 FLVGRSSLGLFTSSLEDPLGIAQHHDAVSGTAKQHTTDDYSKRLAIGVSQVEK--GVNTA 443
F GRS+ L T SL D L +AQHHDAV+GT KQH +DY+KRL+IG +Q EK + +
Sbjct: 390 FFKGRSNSDLTTDSLADALALAQHHDAVTGTEKQHVANDYAKRLSIGYTQAEKLVSSSLS 449
Query: 444 LSCLTSSKGTCTA--TKFSQCQLLNISYCPSTEEGISSAKSLVIVVYNPLGWERSDFVRV 501
+ SK C + T F QC LLNI+YCP +E +S KSLV++VYN LGW+R D +R+
Sbjct: 450 CLSQSGSKSHCPSQTTNFEQCPLLNITYCPPSEMDLSQGKSLVVLVYNSLGWKREDVLRI 509
Query: 502 PVNDANLIVKTSDGTSLESQLVEVDIVTARLRKLYIKAYLGITSDKPPKYWLVFQASVPP 561
PV +++V S+G +ESQL+ + + +R+ ++KAYLG+ PK+WL F SVPP
Sbjct: 510 PVISDSIVVHDSEGREVESQLLPIANASLYMREKHVKAYLGMLPAAKPKFWLAFPVSVPP 569
Query: 562 LGWNTYFISKSTGTGSNGMGYVSTMVS---PSNDTIEIGPGPLKMSYSSKSGQLKRMFNS 618
LG+NTYFI S+G S + +ST+ S N ++IG G LK+ Y++ +G L NS
Sbjct: 570 LGFNTYFI--SSGKKSASVSLMSTLHSSQGSENSNMQIGQGQLKLQYNA-AGALSLYSNS 626
Query: 619 ISAVDLPIQQSFLWYASSTGDSEDSQASGAYIFRPNRTTPTIVSGMAPLKVIHGPLVDEV 678
+ V+ +Q + +Y G+ D QASGAYIFRPN T P G PL V+ G ++DEV
Sbjct: 627 KTQVEANFEQKYKYYIGQDGNGSDPQASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEV 686
Query: 679 HQQFSSWIYQVTRLYKNKEHAEVEYTIGPIPVXXXXXIGKEVVTRLTTNMATNKIFYTDS 738
HQQ + WIYQ+ R+YK K++ E E+ +GPIPV GKE+ T + TNMATNK FYTDS
Sbjct: 687 HQQINPWIYQINRVYKGKDYVETEFIVGPIPVDDGN--GKELSTEVVTNMATNKTFYTDS 744
Query: 739 NGRDFLERVRNHRDDWDLNLSQPVAGNYYPVNQGIYVADGKYELSVLVDHAVGASSIQDG 798
+GRDF++R+R++R +W + + QP+AGNYYPVN GIYV DG ELS+LVD +VG +SI+DG
Sbjct: 745 SGRDFIKRIRDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSRELSILVDRSVGGASIKDG 804
Query: 799 QIEVMLHRRLSADDGRGVGEPLNEVVCVDQKCDGLVARATYYINVNKKGHGAHWRRTYSQ 858
QIE+MLHRRL DDGRGV E LNE C D +C+GLV + YY+ ++ +G GA WRRT+ Q
Sbjct: 805 QIELMLHRRLLHDDGRGVAEALNETTCFDNQCEGLVIQGKYYLKIDPQGEGARWRRTFGQ 864
Query: 859 QVYSPFLVAFAHEDERSWKSNNIAKASTVEGNYSLPDNVAIITLQSLDDGTTLLRLAHLF 918
++YSP L+AFA +D +W ++++ K S ++ YSLPDNVA++TLQ L+DGT LLRLAHL+
Sbjct: 865 EIYSPLLIAFAEQDGGNWVNSHVTKFSAMDPAYSLPDNVALLTLQELEDGTVLLRLAHLY 924
Query: 919 QAQEDTQYSVMAKVELRKLFGKRIIKDLTETSLSANQKKSEM--KKLNWRVTGESKTDPA 976
+A E S +A V+L+++F + I + ETSLSANQ++S M K+L W+V G D
Sbjct: 925 EAGEHKDLSALASVDLKRVFPDKKIVKIVETSLSANQERSAMEKKRLKWKVEG-PPADEK 983
Query: 977 PLKGGPVDSHALVVELGPMEIRTFLLKF 1004
++GGPVD LVV+LGPMEIRTFL+ F
Sbjct: 984 IVRGGPVDPSKLVVDLGPMEIRTFLINF 1011
>Os06g0245700 Similar to Glycosyl hydrolase
Length = 969
Score = 271 bits (693), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 223/803 (27%), Positives = 354/803 (44%), Gaps = 114/803 (14%)
Query: 97 AFFQRWWAEKSPKIQAIVHKLVDSGQLEFINGGWCMHDEAAVHYIDMIDQTTLGHRVIKK 156
++ +RWW + K Q KLV GQLE ++GGW M+DEA HY +I+Q G+ +
Sbjct: 2 SYLERWWRDAPRKKQEAFTKLVRDGQLEIVSGGWVMNDEANSHYFAIIEQMMEGNMWLND 61
Query: 157 QFNKIPRAGWQIDPFGHSAVQGYLLGAELGFDSMHFARIDYQDRAKRKGDKGLEVIWRGS 216
+P+ W IDPFG+SA YLL +GF +M R Y+ + + +K LE +WR +
Sbjct: 62 TIGVVPKNSWSIDPFGYSATMAYLL-RRMGFHNMLIQRTHYELKKELAMNKNLEYLWRQN 120
Query: 217 RTFGSSSQIFTNAFPVH-YSPPDGFGFEI-----FD--------------DFVPVQDDML 256
++ IF + P + Y P G E FD F PV+ +
Sbjct: 121 WDIDETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARMRSFSYESCPWRFDPVETNA- 179
Query: 257 LFDYNLKERVNDFVAAALKQANVTRTNHIMWTMGDDFNY---QYAESWFRNMDRLINYVN 313
N++ER + K++ + RTN ++ +GDDF Y + AE+ FRN ++L +Y+N
Sbjct: 180 ---NNVQERAMKLLDQYRKKSTLYRTNTLLIPLGDDFRYVSTEEAEAQFRNYEKLFDYIN 236
Query: 314 KDGRVHA------LYSTPSIYTDAKHASNES------------WPLKYDDYFPYADAKNA 355
+ + A L S D N + +P D+F YAD
Sbjct: 237 SNPHLKAEVKFGTLEDYFSTLRDEAERINYTRPGELVSSELPGFPTLSGDFFTYADRNQD 296
Query: 356 YWTGYFTSRPTFKRYIRMISGYYLAARQL-EFLVGRS----------SLGLFTSSLEDPL 404
YW+GY+ SRP FK R++ A+ L F++G S ++ L
Sbjct: 297 YWSGYYVSRPYFKAVDRVLEQTLRASEILSSFVLGYCQKLQCVKLPISFSHKLTAARRNL 356
Query: 405 GIAQHHDAVSGTAKQHTTDDYSKRLAIGVSQVE----KGVNTALSCLTSSKGTCTATKFS 460
+ QHHD V+GTAK H DY R+ + ++ + V L + + F
Sbjct: 357 ALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQLFMSRAVEVLLGDIHDRSDPTLLSHFE 416
Query: 461 QCQLLNISYCPSTEEGIS--SAKSLVIVVYNPLGWERSDFVRVPVNDANLIVKTSDGTSL 518
Q + + ++ K+ +V++NPL R + V V V++ ++ V S+G+ L
Sbjct: 417 PVQERSKYDVQPVYKVLNPHGGKAHSVVLFNPLEQTRDEIVMVVVSNPDVSVLNSNGSCL 476
Query: 519 ESQLV-EVDIVTARLRKLYIKAYLGITSDKPPKYWLVFQASVPPLGWNTYFISKSTGTGS 577
SQ+ E V+ +++ + YW +ASVP LG TY+++ TG
Sbjct: 477 RSQISPEWQYVSGE----------KVSTGQHRLYW---RASVPALGLETYYVA----TGY 519
Query: 578 NGMGYVSTMVSPSNDTIEIGPGPLKMSYSSKSGQLKRMFNSISAVDLPIQQSFLWYASST 637
+ + V + T P P S G+ M NS ++ ++ L +
Sbjct: 520 DDCAKATPAVVKAFTTAGQFPCPEPYVCSKLEGKTVEMKNSYHSLSFDVRHGLLQTVTRN 579
Query: 638 GDSED-----------SQASGAYIFRPNRTTPTIVSGMAPLKVIHGPLVDEVH-----QQ 681
D E S SGAY+F+P +IV + GPLV E H Q
Sbjct: 580 KDGEHTDVGEEIGMYRSHGSGAYLFKPIGEAQSIVEEGGYFILSEGPLVQEAHSLPKTQW 639
Query: 682 FSSWIYQVTRLYKNKEH-----AEVEYTIGPIPVXXXXXIGKEVVTRLTTNMATNKIFYT 736
S I TR+Y + E EY + + KE++ R T++ +FY+
Sbjct: 640 HKSPISHSTRIYSCGDSIQDMLIEKEYH---VELVGHVFNDKELIVRFKTDIDNQGVFYS 696
Query: 737 DSNGRDFLERVRNHRDDWDLNLSQPVAGNYYPVNQGIYVADG-KYELSVLVDHAVGASSI 795
D NG + R +D P+ GNYYP+ ++ D SV ++GA+S+
Sbjct: 697 DLNGFQM-----SRRQTYD---KIPLQGNYYPMPSLAFLQDSLGNRFSVHSKQSLGAASL 748
Query: 796 QDGQIEVMLHRRLSADDGRGVGE 818
++G +E+ML RRL+ DDGRG+G+
Sbjct: 749 KNGWLEIMLDRRLTQDDGRGLGQ 771
>AK072146
Length = 480
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 126/285 (44%), Gaps = 37/285 (12%)
Query: 556 QASVPPLGWNTYFISKSTGTGSNGMGYVSTMVSPSNDTIEIGPGPLKMSYSSKSGQLKRM 615
+ASVP LG TY+++ TG + + V + T P P S G+ M
Sbjct: 13 RASVPALGLETYYVA----TGYDDCAKATPAVVKAFTTAGQFPCPEPYVCSKLEGKTVEM 68
Query: 616 FNSISAVDLPIQQSFLWYASSTGDSED-----------SQASGAYIFRPNRTTPTIVSGM 664
NS ++ ++ L + D E S SGAY+F+P +IV
Sbjct: 69 KNSYHSLSFDVRHGLLQTVTRNKDGEHTDVGEEIGMYRSHGSGAYLFKPIGEAQSIVEEG 128
Query: 665 APLKVIHGPLVDEVH-----QQFSSWIYQVTRLYKNKEHA-----EVEYTIGPIPVXXXX 714
+ GPLV E H Q S I TR+Y + E EY + +
Sbjct: 129 GYFILSEGPLVQEAHSLPKTQWHKSPISHSTRIYSCGDSIQDMLIEKEYHV---ELVGHV 185
Query: 715 XIGKEVVTRLTTNMATNKIFYTDSNGRDFLERVRNHRDDWDLNLSQPVAGNYYPVNQGIY 774
KE++ R T++ +FY+D NG + R +D P+ GNYYP+ +
Sbjct: 186 FNDKELIVRFKTDIDNQGVFYSDLNGFQM-----SRRQTYD---KIPLQGNYYPMPSLAF 237
Query: 775 VADG-KYELSVLVDHAVGASSIQDGQIEVMLHRRLSADDGRGVGE 818
+ D SV ++GA+S+++G +E+ML RRL+ DDGRG+G+
Sbjct: 238 LQDSLGNRFSVHSKQSLGAASLKNGWLEIMLDRRLTQDDGRGLGQ 282
>AK059935
Length = 257
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 800 IEVMLHRRLSADDGRGVGEPLNEVVCV------DQKCDGLVARATYYINVNKKGHGA--H 851
+EVM+HRRL DD +GV E LNE + GL+ R + ++NV+ G
Sbjct: 1 MEVMVHRRLLMDDEKGVNEHLNETETLYNPTTKTSTTAGLIVRGSLFLNVDNAGDDGIRS 60
Query: 852 WRRTYSQQVYSPFLVAFAHEDERSWKSNNIAKASTVEGNYSLPDNVAIITLQSLDDGTTL 911
R QQ ++P V +S AK + N P+NV + TL L + L
Sbjct: 61 LRSKMEQQFFTPLAVF-----RKSVADEVDAKLPWLTLN-EFPENVGLTTLVELGKESLL 114
Query: 912 LRLAHLFQAQEDTQYSVMAKVELRKLF--GKRIIKDLTETSLSANQKKSEMKKLN---WR 966
+RL HL+ E + S + K F + ++TE +LS +E ++ N WR
Sbjct: 115 VRLTHLYALDEHSSLSKTVDFDFAKYFVVAGSSLSEVTELTLSGTMPVAESRRANNLKWR 174
Query: 967 VTGESKTD-----PAPLKGGPVDSHALVVELGPMEIRTFLLKF 1004
V GE D P P+KG V+L ME+R F + F
Sbjct: 175 VEGEDDDDVPVRFPIPVKGTS-------VQLQAMEVRAFRISF 210
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 33,924,876
Number of extensions: 1457212
Number of successful extensions: 2765
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2743
Number of HSP's successfully gapped: 5
Length of query: 1004
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 893
Effective length of database: 11,240,047
Effective search space: 10037361971
Effective search space used: 10037361971
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)