Os11g0525600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alpha-mannosidase.
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Os11g0525600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alpha-mannosidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.3 | 0.549 | 10.9 | -1.92 | 2.17 | 0.0609 | 2.16 | 6.04 | 0.347 | 22.8 | 22.82 | 200 | -- | -- |
| 159.19 | 0.592 | 11 | -2.92 | 2.26 | 0.445 | 1.82 | -- | 0.0529 | 22.7 | 19.34 | 2588 | -- | -- |
| 145.94 | 0.563 | 10.9 | -1.79 | 2.08 | 0.177 | -- | 5.71 | 0.373 | 22.7 | 20.95 | 618 | -- | -- |
| 165.93 | 0.6 | 11 | -3.1 | 2.06 | 0.902 | -- | -- | -0.0395 | 22.9 | 15.89 | 479 | -- | -- |
| 358.21 | 0.881 | 10.9 | -2.63 | -- | 2.26 | -- | 4.62 | 0.0121 | -- | 11.11 | 769 | -- | -- |
| 162.02 | 0.597 | 11 | -2.82 | 2.17 | -- | 1.85 | -- | 0.128 | 22.4 | -- | -- | -- | -- |
| 175.86 | 0.621 | 11 | -2.9 | 2.15 | -- | -- | -- | 0.122 | 22.5 | -- | -- | -- | -- |
| 374.39 | 0.901 | 11 | -3.47 | -- | 2.34 | -- | -- | -0.229 | -- | 12.02 | 772 | -- | -- |
| 254.31 | 0.743 | 10.8 | -- | 2.18 | -1.93 | -- | -- | 1.02 | 22.5 | 6.463 | 47520 | -- | -- |
| 460.58 | 1 | 10.9 | -2.86 | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
| 397.41 | 0.933 | 10.9 | -- | 2.14 | -- | -- | -- | 0.445 | 22.4 | -- | -- | -- | -- |
| 546.4 | 1.09 | 10.7 | -- | -- | -1.83 | -- | -- | 0.997 | -- | 4.561 | 47520 | -- | -- |
| 676.54 | 1.21 | 10.8 | -- | -- | -- | -- | -- | 0.448 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.55 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 12 | 132.87 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 11 |
| 17 | 133.16 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 24 | 133.58 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 29 | 133.99 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 9 |
| 36 | 134.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 38 | 134.29 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 5 |
| 46 | 134.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 49 | 134.56 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 14 |
| 61 | 134.76 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 76 | 134.94 | temperature | 25 | 720 | > th | dose independent | sin | 5 | NA |
| 93 | 135.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 145 | 135.90 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 147 | 135.92 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 17 |
| 181 | 136.50 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 194 | 136.70 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 22 |
| 204 | 136.85 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 22 |
| 214 | 136.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 221 | 137.00 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 222 | 137.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 299 | 137.82 | temperature | 25 | 720 | < th | dose independent | sin | 8 | NA |
| 355 | 138.34 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 398 | 138.55 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 4 |
| 413 | 138.67 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 16 |
| 415 | 138.68 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 433 | 138.77 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 465 | 138.88 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 513 | 139.11 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 23 |
| 514 | 139.11 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 529 | 139.16 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 565 | 139.33 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 566 | 139.34 | wind | 1 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 577 | 139.39 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 590 | 139.45 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 23 |
| 613 | 139.58 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 23 |
| 617 | 139.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 633 | 139.66 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 644 | 139.71 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 23 |
| 692 | 139.94 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 714 | 140.02 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 17 |
| 756 | 140.14 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 764 | 140.16 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 23 |
| 783 | 140.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 785 | 140.28 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 907 | 140.55 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 23 |
| 914 | 140.58 | radiation | 1 | 90 | > th | dose independent | sin | 1 | NA |
| 932 | 140.64 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 10 |