Os10g0140200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 38 domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0140200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Glycoside hydrolase, family 38 domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.51 | 0.434 | 11.7 | -2.38 | 0.813 | -1.64 | -0.871 | -1.25 | 0.497 | 0.383 | 1.09 | 1471 | -- | -- |
| 86.97 | 0.434 | 11.7 | -2.26 | 0.778 | -1.51 | -0.797 | -- | 0.499 | 0.413 | 1.216 | 1481 | -- | -- |
| 88.52 | 0.438 | 11.7 | -2.32 | 0.819 | -1.61 | -- | -0.992 | 0.5 | 0.12 | 1.08 | 1466 | -- | -- |
| 88.95 | 0.439 | 11.7 | -2.26 | 0.772 | -1.5 | -- | -- | 0.523 | 0.0804 | 1.468 | 1487 | -- | -- |
| 100 | 0.466 | 11.7 | -2.09 | -- | -2.36 | -- | -0.307 | 0.653 | -- | 1.131 | 1603 | -- | -- |
| 114.26 | 0.501 | 11.7 | -2.51 | 0.95 | -- | -0.853 | -- | 0.341 | 0.21 | -- | -- | -- | -- |
| 117.28 | 0.507 | 11.7 | -2.48 | 0.954 | -- | -- | -- | 0.346 | 0.00739 | -- | -- | -- | -- |
| 98.01 | 0.461 | 11.7 | -2.19 | -- | -2.19 | -- | -- | 0.555 | -- | 1.212 | 1618 | -- | -- |
| 201.95 | 0.662 | 11.7 | -- | 1.17 | -2.15 | -- | -- | 0.784 | 23.9 | 0.1262 | 1413 | -- | -- |
| 174.58 | 0.617 | 11.7 | -2.45 | -- | -- | -- | -- | 0.359 | -- | -- | -- | -- | -- |
| 278.82 | 0.781 | 11.7 | -- | 0.922 | -- | -- | -- | 0.622 | 23.9 | -- | -- | -- | -- |
| 209.09 | 0.673 | 11.7 | -- | -- | -3.01 | -- | -- | 0.866 | -- | 0.69 | 1567 | -- | -- |
| 332.4 | 0.851 | 11.7 | -- | -- | -- | -- | -- | 0.631 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.49 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 2 | 82.55 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 6 | 82.72 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 13 | 84.56 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 14 | 84.63 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 15 | 85.01 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 1 | NA |
| 16 | 85.20 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 18 | 85.33 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 19 | 85.37 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 27 | 85.56 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 15 | 2 |
| 29 | 85.62 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 31 | 85.67 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 55 | 85.91 | radiation | 1.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 60 | 85.94 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 22 | 19 |
| 64 | 85.99 | radiation | 1.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 93 | 86.35 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 18 |
| 106 | 86.39 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 116 | 86.51 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |
| 185 | 86.61 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 187 | 86.62 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 206 | 86.67 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 225 | 86.87 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 18 |
| 233 | 86.93 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 236 | 86.97 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 253 | 87.04 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 263 | 87.08 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 270 | 87.11 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 274 | 87.11 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 352 | 87.46 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 354 | 87.46 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 371 | 87.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 373 | 87.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 383 | 87.74 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 384 | 87.74 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 391 | 87.82 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 420 | 87.96 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 431 | 88.03 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 433 | 88.04 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 473 | 88.21 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 492 | 88.34 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 504 | 88.40 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 9 | 8 |
| 527 | 88.57 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 537 | 88.64 | radiation | 1.0 | 1440 | > th | dose independent | sin | 13 | NA |
| 562 | 88.80 | radiation | 1.0 | 1440 | < th | dose independent | sin | 13 | NA |
| 603 | 89.06 | wind | 1.0 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 608 | 89.09 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 622 | 89.17 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 625 | 89.18 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 637 | 89.25 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 653 | 89.35 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 670 | 89.36 | wind | 1.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 691 | 89.46 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 694 | 89.46 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 751 | 89.63 | wind | 1.0 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 758 | 89.66 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 762 | 89.68 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 774 | 89.71 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 811 | 89.75 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 829 | 89.79 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 841 | 89.83 | humidity | 70.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 879 | 89.91 | humidity | 70.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 884 | 89.92 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 18 |
| 925 | 89.98 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 9 |
| 939 | 89.99 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 984 | 90.07 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 18 | 18 |