BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0124100 Os10g0124100|AK120792
         (520 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0124100  Conserved hypothetical protein                      849   0.0  
Os03g0241400  Conserved hypothetical protein                      160   2e-39

>Os10g0124100 Conserved hypothetical protein
          Length = 520

 Score =  849 bits (2193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/520 (81%), Positives = 426/520 (81%)

Query: 1   MARCFPYTRNPVXXXXXXXXXXXVEPGIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 60
           MARCFPYTRNPV           VEPGID                              G
Sbjct: 1   MARCFPYTRNPVAESMSSAAAAAVEPGIDKLQKEREMMQKKEKKERKKEKRRQKKAAQLG 60

Query: 61  EKYETDDXXXXXXXXXXXXXXCEIVGEETRKVCNVTMXXXXXXXXXXXXXAPSYSQALRC 120
           EKYETDD              CEIVGEETRKVCNVTM             APSYSQALRC
Sbjct: 61  EKYETDDHHSKHGHKKRKHSGCEIVGEETRKVCNVTMEHLEKSSLSEEHEAPSYSQALRC 120

Query: 121 TPESSLDSTKRLRTEVSSSPSQTRNGVNIRVKFTPTNQRRDPEATTGMSMKPRVTEQSPV 180
           TPESSLDSTKRLRTEVSSSPSQTRNGVNIRVKFTPTNQRRDPEATTGMSMKPRVTEQSPV
Sbjct: 121 TPESSLDSTKRLRTEVSSSPSQTRNGVNIRVKFTPTNQRRDPEATTGMSMKPRVTEQSPV 180

Query: 181 KETGMDLSMANRKREFQPHVNTXXXXXXXXXXXXNMSIRNGNCLDESRKVSQQHDAKSMQ 240
           KETGMDLSMANRKREFQPHVNT            NMSIRNGNCLDESRKVSQQHDAKSMQ
Sbjct: 181 KETGMDLSMANRKREFQPHVNTVSVVKQVVSQQKNMSIRNGNCLDESRKVSQQHDAKSMQ 240

Query: 241 RVNMVQRVRTKSTPIAAMQRVDPPSSEKAVMQRANPAPTKVMQGVEAAPVKSMQRANPTS 300
           RVNMVQRVRTKSTPIAAMQRVDPPSSEKAVMQRANPAPTKVMQGVEAAPVKSMQRANPTS
Sbjct: 241 RVNMVQRVRTKSTPIAAMQRVDPPSSEKAVMQRANPAPTKVMQGVEAAPVKSMQRANPTS 300

Query: 301 TKVMQEVEATPVKAMQIAGHITLSKVFNRESTQVQLRKETGGPLLGGQLNTGRPTLLNKP 360
           TKVMQEVEATPVKAMQIAGHITLSKVFNRESTQVQLRKETGGPLLGGQLNTGRPTLLNKP
Sbjct: 301 TKVMQEVEATPVKAMQIAGHITLSKVFNRESTQVQLRKETGGPLLGGQLNTGRPTLLNKP 360

Query: 361 KVCADPPILLSKPEMLCVEPPGLLNKPKAHXXXXXXXXXXXXXXEAQEEPCSVGSVLAAA 420
           KVCADPPILLSKPEMLCVEPPGLLNKPKAH              EAQEEPCSVGSVLAAA
Sbjct: 361 KVCADPPILLSKPEMLCVEPPGLLNKPKAHVEPPVVKQQQQIVPEAQEEPCSVGSVLAAA 420

Query: 421 SPVTEAQQSSSDRKSRKAEKKGRKLADLFVNWKPSPTQMEDTDVGDQDWLFSCRATPKNN 480
           SPVTEAQQSSSDRKSRKAEKKGRKLADLFVNWKPSPTQMEDTDVGDQDWLFSCRATPKNN
Sbjct: 421 SPVTEAQQSSSDRKSRKAEKKGRKLADLFVNWKPSPTQMEDTDVGDQDWLFSCRATPKNN 480

Query: 481 CRTFDGSARCQPTEQLFSLQPRAVHLPDLLMYQLPFVVPF 520
           CRTFDGSARCQPTEQLFSLQPRAVHLPDLLMYQLPFVVPF
Sbjct: 481 CRTFDGSARCQPTEQLFSLQPRAVHLPDLLMYQLPFVVPF 520



>Os03g0241400 Conserved hypothetical protein
          Length = 362

 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 144/420 (34%), Positives = 198/420 (47%), Gaps = 85/420 (20%)

Query: 111 APSYSQALRCTPESSLDSTKRLRTEVSSSPSQTRNGVNIRVKFTPTNQRRDPEATTGMSM 170
           AP ++Q    +PESS DS+KR R  V  SPSQ +NG  +R+K      RRD +++  +S 
Sbjct: 18  APCFTQTEHGSPESSQDSSKR-RKVVLPSPSQAKNGNILRIKI-----RRDQDSSASLSE 71

Query: 171 KPRVTEQSPVKETGMDLSMANRKREFQPHVNTXXXXXXXXXXXXNMSIRNGNCLDESRKV 230
           K  V  Q+PV + G   S+ ++K   QPH NT             M +R  +   +S K 
Sbjct: 72  KSNVV-QTPVHQMGSVSSLPSKKNSMQPH-NT------------EMMVRTASTQQQSIK- 116

Query: 231 SQQHDAKSMQRVNMVQRVRTKSTPIAAMQRVDPPSSEKAVMQRANPAPTKVMQGVEAAPV 290
               D +++ +  M        TP   M RVD P S +A  +R    P +++  V  +P 
Sbjct: 117 ---GDFQAVPKQGM-------PTPAKVMPRVDVPPSMRASKERIGLRPAEMLANVGPSPS 166

Query: 291 KSMQRANPTSTKVMQEVEATPVKAMQIAG-------HITLSKVFNRESTQVQLRKETGGP 343
           K+ Q  NP + KV Q V+  P KA Q          HI  ++ F + S Q +++ E   P
Sbjct: 167 KAKQIVNPAAAKVTQRVDPPPAKASQRIDPLLPSKVHIDATRSFTKVS-QTEIKPEVQPP 225

Query: 344 LLGGQLNTGRPTLLNKPKVCADPPILLSKPEMLCVEPPGLLNKPKAHXXXXXXXXXXXXX 403
           +L  ++    PT+ N+ ++    P                                    
Sbjct: 226 IL--KVPVAMPTI-NRQQIDTSQP------------------------------------ 246

Query: 404 XEAQEEPCSVGSVLAAASPVTEAQQSSSDRKSRKAEKKGRKLADLFVNWKPSPTQMEDTD 463
              +EEPCS G    AAS   E Q  S  +KSRKAEKK +K  DLFV W P   +M+D D
Sbjct: 247 ---KEEPCSSGRNAEAASVSVEKQSKSDRKKSRKAEKKEKKFKDLFVTWDPPSMEMDDMD 303

Query: 464 VGDQDWLFSCRATPK---NNCRTFDGSARCQPTEQLFSLQPRAVHLPDLLMYQLPFVVPF 520
           +GDQDWL      P     NCR        Q  EQ FSLQPRA+HLPDL +YQLP+VVPF
Sbjct: 304 LGDQDWLLDSTRKPDAGIGNCREIVDPLTSQSAEQ-FSLQPRAIHLPDLHVYQLPYVVPF 362



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.127    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,885,983
Number of extensions: 583271
Number of successful extensions: 1426
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1409
Number of HSP's successfully gapped: 3
Length of query: 520
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 415
Effective length of database: 11,553,331
Effective search space: 4794632365
Effective search space used: 4794632365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)