BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0115600 Os10g0115600|AK059504
(463 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0115600 Similar to U1 small nuclear ribonucleoprotein ... 497 e-141
Os09g0513700 RNA-binding region RNP-1 (RNA recognition moti... 97 3e-20
>Os10g0115600 Similar to U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70
kDa) (snRNP70) (U1-70K). Splice isoform Short
Length = 463
Score = 497 bits (1280), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/255 (94%), Positives = 241/255 (94%)
Query: 1 MGDYGSGMMRGNPDGGGMQSRTKGQRVNVQQLKLMGQGHPTGLTPNLLKLFEPRPPLDFK 60
MGDYGSGMMRGNPDGGGMQSRTKGQRVNVQQLKLMGQGHPTGLTPNLLKLFEPRPPLDFK
Sbjct: 1 MGDYGSGMMRGNPDGGGMQSRTKGQRVNVQQLKLMGQGHPTGLTPNLLKLFEPRPPLDFK 60
Query: 61 PPVEKRKLPAYTGMAQFVSQFAEPGDPEYAPPVPTCETKAEKKDRIRKSKLDQGAAKVAE 120
PPVEKRKLPAYTGMAQFVSQFAEPGDPEYAPPVPTCETKAEKKDRIRKSKLDQGAAKVAE
Sbjct: 61 PPVEKRKLPAYTGMAQFVSQFAEPGDPEYAPPVPTCETKAEKKDRIRKSKLDQGAAKVAE 120
Query: 121 ELQKYDPQSDPNATGDPYKTLFVARLNYETSEHRVKREFEAYGPIKRVRLVTDKETNKPR 180
ELQKYDPQSDPNATGDPYKTLFVARLNYETSEHRVKREFEAYGPIKRVRLVTDKETNKPR
Sbjct: 121 ELQKYDPQSDPNATGDPYKTLFVARLNYETSEHRVKREFEAYGPIKRVRLVTDKETNKPR 180
Query: 181 GYAFIEYMHTRDMKNAYKQADGRKVDNRRVLVDVERGRTVPNWRPXXXXXXXXXXXXXXE 240
GYAFIEYMHTRDMKNAYKQADGRKVDNRRVLVDVERGRTVPNWRP E
Sbjct: 181 GYAFIEYMHTRDMKNAYKQADGRKVDNRRVLVDVERGRTVPNWRPRRLGGGLGSSRIGGE 240
Query: 241 NAEQKLSTRDQQHAG 255
NAEQKLSTRDQQHAG
Sbjct: 241 NAEQKLSTRDQQHAG 255
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/88 (81%), Positives = 72/88 (81%)
Query: 376 ASHERDRGHMHERDAEFANGEPKHDQEYGYNYEQHKSHDAYETERSKRHEHEYYQMQPNN 435
ASHERDRGHMHERDAEFANGEPKHDQEYGYNYEQHKSHDAYETERSKRHEHEYYQMQPNN
Sbjct: 376 ASHERDRGHMHERDAEFANGEPKHDQEYGYNYEQHKSHDAYETERSKRHEHEYYQMQPNN 435
Query: 436 TXXXXXXXXXXXXXXXXQYHQAADEHNN 463
T QYHQAADEHNN
Sbjct: 436 TEPEGPEEGEAYDEGDYQYHQAADEHNN 463
>Os09g0513700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 375
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 64/110 (58%)
Query: 116 AKVAEELQKYDPQSDPNATGDPYKTLFVARLNYETSEHRVKREFEAYGPIKRVRLVTDKE 175
A + YDP DP ATGDPY T+FV RL+ T + +++E YG +K +RLV D
Sbjct: 42 ALLCSTAGLYDPFGDPKATGDPYCTVFVGRLSRYTDDETLRKEMSRYGRVKSMRLVRDIV 101
Query: 176 TNKPRGYAFIEYMHTRDMKNAYKQADGRKVDNRRVLVDVERGRTVPNWRP 225
T RGYAF+EY R+M+ AY+ A +D VLVD R + +P W P
Sbjct: 102 TGASRGYAFVEYETDREMRRAYEDAHHSIIDGSEVLVDYYRQQLMPGWIP 151
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.131 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,075,581
Number of extensions: 503734
Number of successful extensions: 1363
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1368
Number of HSP's successfully gapped: 3
Length of query: 463
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 359
Effective length of database: 11,605,545
Effective search space: 4166390655
Effective search space used: 4166390655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)