Os09g0513700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os09g0513700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.58 | 0.251 | 11.4 | -0.49 | 0.698 | -1.02 | -0.0754 | -0.0979 | 0.118 | 24 | 24.96 | 75 | -- | -- |
| 28.59 | 0.249 | 11.4 | -0.505 | 0.698 | -1.02 | -0.0974 | -- | 0.114 | 23.9 | 24.93 | 73 | -- | -- |
| 28.6 | 0.249 | 11.4 | -0.478 | 0.7 | -1.03 | -- | -0.156 | 0.121 | 23.9 | 24.91 | 72 | -- | -- |
| 28.2 | 0.249 | 11.4 | -0.485 | 0.699 | -1.1 | -- | -- | 0.164 | 23.7 | 23.17 | 53 | -- | -- |
| 47.06 | 0.32 | 11.4 | -0.644 | -- | -0.94 | -- | 0.541 | 0.0762 | -- | 28.35 | 842 | -- | -- |
| 43.42 | 0.309 | 11.4 | -0.262 | 0.541 | -- | -0.122 | -- | 0.312 | 23.3 | -- | -- | -- | -- |
| 43.49 | 0.309 | 11.4 | -0.257 | 0.541 | -- | -- | -- | 0.313 | 23.3 | -- | -- | -- | -- |
| 47.24 | 0.32 | 11.4 | -0.515 | -- | -0.922 | -- | -- | 0.118 | -- | 27.6 | 833 | -- | -- |
| 33.86 | 0.273 | 11.4 | -- | 0.665 | -0.92 | -- | -- | 0.241 | 23.6 | 23.01 | 41 | -- | -- |
| 61.82 | 0.367 | 11.4 | -0.244 | -- | -- | -- | -- | 0.318 | -- | -- | -- | -- | -- |
| 45.23 | 0.315 | 11.4 | -- | 0.538 | -- | -- | -- | 0.341 | 23.3 | -- | -- | -- | -- |
| 53.42 | 0.34 | 11.4 | -- | -- | -0.727 | -- | -- | 0.209 | -- | 27.6 | 813 | -- | -- |
| 63.39 | 0.372 | 11.4 | -- | -- | -- | -- | -- | 0.345 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.72 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 5 | 28.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 19 | 28.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 34 | 28.68 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 43 | 28.74 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 45 | 28.74 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 67 | 28.80 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 73 | 28.83 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 76 | 28.84 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 81 | 28.85 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 88 | 28.89 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 11 |
| 122 | 29.05 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 153 | 29.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 222 | 29.63 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 226 | 29.66 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 23 |
| 299 | 30.06 | temperature | 25 | 90 | < th | dose dependent | sin | 13 | NA |
| 417 | 30.61 | temperature | 10 | 270 | > th | dose dependent | sin | 11 | NA |
| 455 | 30.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 11 |
| 460 | 30.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 533 | 31.09 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 23 |
| 583 | 31.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 584 | 31.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 668 | 31.58 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 22 |
| 696 | 31.65 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 714 | 31.72 | temperature | 20 | 90 | < th | dose independent | rect. | 10 | 21 |
| 734 | 31.76 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 763 | 31.86 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 20 |
| 771 | 31.87 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 815 | 31.97 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 22 |
| 819 | 31.98 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 19 |
| 837 | 32.02 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 842 | 32.03 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 22 |
| 869 | 32.07 | temperature | 20 | 10 | < th | dose independent | rect. | 10 | 21 |
| 889 | 32.10 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 961 | 32.20 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |