BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0105400 Os10g0105400|AK103627
(1168 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0105400 Conserved hypothetical protein 2135 0.0
Os03g0226600 Conserved hypothetical protein 1076 0.0
>Os10g0105400 Conserved hypothetical protein
Length = 1168
Score = 2135 bits (5531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1038/1168 (88%), Positives = 1038/1168 (88%)
Query: 1 MPPPMLADXXXXXXXXXXXXXXXXXXXXXXXXIWSRRRDEITFDRLDKFWSALSPQARHE 60
MPPPMLAD IWSRRRDEITFDRLDKFWSALSPQARHE
Sbjct: 1 MPPPMLADAAAAAPCSSSSCSSNSSSSSSSSAIWSRRRDEITFDRLDKFWSALSPQARHE 60
Query: 61 LLRIDKQTLIEHARRNLYCSRCNGLLLESFTQMVMHGKLLQQKGPGVVQDDSWGGLSTTK 120
LLRIDKQTLIEHARRNLYCSRCNGLLLESFTQMVMHGKLLQQKGPGVVQDDSWGGLSTTK
Sbjct: 61 LLRIDKQTLIEHARRNLYCSRCNGLLLESFTQMVMHGKLLQQKGPGVVQDDSWGGLSTTK 120
Query: 121 DGLLTLLDCFINTNSLHVLQNIFDNARAREREREMLYPDACGGGERGWISPVIANYGRGH 180
DGLLTLLDCFINTNSLHVLQNIFDNARAREREREMLYPDACGGGERGWISPVIANYGRGH
Sbjct: 121 DGLLTLLDCFINTNSLHVLQNIFDNARAREREREMLYPDACGGGERGWISPVIANYGRGH 180
Query: 181 GTRDTCALHTARLSCDALVGYWFDLCEETRSSLLRMREEDFIERLMHRFDSKRFCRDCRR 240
GTRDTCALHTARLSCDALVGYWFDLCEETRSSLLRMREEDFIERLMHRFDSKRFCRDCRR
Sbjct: 181 GTRDTCALHTARLSCDALVGYWFDLCEETRSSLLRMREEDFIERLMHRFDSKRFCRDCRR 240
Query: 241 NVIREFXXXXXXXXXXXXHHCTSWFCITDTAFRCEVFEDAVLVDCRQSFLDQDKSYNRFE 300
NVIREF HHCTSWFCITDTAFRCEVFEDAVLVDCRQSFLDQDKSYNRFE
Sbjct: 241 NVIREFKELKELKRLRREHHCTSWFCITDTAFRCEVFEDAVLVDCRQSFLDQDKSYNRFE 300
Query: 301 FAVGTEKGKSDILGFEAVGMNGQVHRKGLDLDQFEDYFVTLRAHYADNKNTDFYVKAHAL 360
FAVGTEKGKSDILGFEAVGMNGQVHRKGLDLDQFEDYFVTLRAHYADNKNTDFYVKAHAL
Sbjct: 301 FAVGTEKGKSDILGFEAVGMNGQVHRKGLDLDQFEDYFVTLRAHYADNKNTDFYVKAHAL 360
Query: 361 KGQSCVHRRLIVGDGFVTITKGESIQSFFEHXXXXXXXXXXXXMDRDGNDTDVDGVHPQK 420
KGQSCVHRRLIVGDGFVTITKGESIQSFFEH MDRDGNDTDVDGVHPQK
Sbjct: 361 KGQSCVHRRLIVGDGFVTITKGESIQSFFEHAEEAEEEDEDDAMDRDGNDTDVDGVHPQK 420
Query: 421 HAKSPELAREFLLDAAAVIFKEQVEKSLREATAQQNAHSVFVSLALKLLEERVHVACKEI 480
HAKSPELAREFLLDAAAVIFKEQVEKSLREATAQQNAHSVFVSLALKLLEERVHVACKEI
Sbjct: 421 HAKSPELAREFLLDAAAVIFKEQVEKSLREATAQQNAHSVFVSLALKLLEERVHVACKEI 480
Query: 481 IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPVQLKPYI 540
I IPVQLKPYI
Sbjct: 481 ITLEKQTKLLEEEEKEKREEEERRERRRTKEREKKLRRKERLKEKEKEKEKIPVQLKPYI 540
Query: 541 GTSSSPLSNSATPINDQSPDIAHSKYSASDDEDKDSIVVTESFSPDTCVDQSLTRESDGQ 600
GTSSSPLSNSATPINDQSPDIAHSKYSASDDEDKDSIVVTESFSPDTCVDQSLTRESDGQ
Sbjct: 541 GTSSSPLSNSATPINDQSPDIAHSKYSASDDEDKDSIVVTESFSPDTCVDQSLTRESDGQ 600
Query: 601 SNEFHCSTTLEFIPSDCNGSFMCEQSTSSRRKLRFRRDSLQEQTTGFWYEDCQDDTGGVG 660
SNEFHCSTTLEFIPSDCNGSFMCEQSTSSRRKLRFRRDSLQEQTTGFWYEDCQDDTGGVG
Sbjct: 601 SNEFHCSTTLEFIPSDCNGSFMCEQSTSSRRKLRFRRDSLQEQTTGFWYEDCQDDTGGVG 660
Query: 661 NIHWQSRERARNAGRGCNSLFSANNRTRERYEYNACSCGQQEDYGYFSPTARSSREMKMS 720
NIHWQSRERARNAGRGCNSLFSANNRTRERYEYNACSCGQQEDYGYFSPTARSSREMKMS
Sbjct: 661 NIHWQSRERARNAGRGCNSLFSANNRTRERYEYNACSCGQQEDYGYFSPTARSSREMKMS 720
Query: 721 RKTMVEKPWLQYRRCYPLDSFIVSKGSRVGSTPNKNAAPKQVWEPMDARKKASLGSSNGS 780
RKTMVEKPWLQYRRCYPLDSFIVSKGSRVGSTPNKNAAPKQVWEPMDARKKASLGSSNGS
Sbjct: 721 RKTMVEKPWLQYRRCYPLDSFIVSKGSRVGSTPNKNAAPKQVWEPMDARKKASLGSSNGS 780
Query: 781 SETVSGVDRSNQVGCSKDIVNCSQILGSEHEELAEACKSITDQPCESSENNQAACNSEPP 840
SETVSGVDRSNQVGCSKDIVNCSQILGSEHEELAEACKSITDQPCESSENNQAACNSEPP
Sbjct: 781 SETVSGVDRSNQVGCSKDIVNCSQILGSEHEELAEACKSITDQPCESSENNQAACNSEPP 840
Query: 841 VVNKPDSCFTKDGGQTANMTXXXXXXXXXEGDRDXXXXXXXXXXAQNPXXXXXXXXXXXX 900
VVNKPDSCFTKDGGQTANMT EGDRD AQNP
Sbjct: 841 VVNKPDSCFTKDGGQTANMTSSDSSSCLSEGDRDSSMSSMTSLSAQNPESSSTSDSEGSS 900
Query: 901 XRNNSNPGNPPTKNGSRSLLEMCAGNGFREYQPQNIHPSDGNQFGFGVTPFQEQLLHQQK 960
RNNSNPGNPPTKNGSRSLLEMCAGNGFREYQPQNIHPSDGNQFGFGVTPFQEQLLHQQK
Sbjct: 901 ERNNSNPGNPPTKNGSRSLLEMCAGNGFREYQPQNIHPSDGNQFGFGVTPFQEQLLHQQK 960
Query: 961 IHAAPYPSTLMGFHNHHMSVPTNGYLAYPQPGHFYPNAVGYGVAGNQCVDFPMQYSNVHP 1020
IHAAPYPSTLMGFHNHHMSVPTNGYLAYPQPGHFYPNAVGYGVAGNQCVDFPMQYSNVHP
Sbjct: 961 IHAAPYPSTLMGFHNHHMSVPTNGYLAYPQPGHFYPNAVGYGVAGNQCVDFPMQYSNVHP 1020
Query: 1021 YAGPEFGYVPAQPVHKTPVNFNAMVPTAALFRNGAPEVINPVIVKPDRQHRHTLPPEPKR 1080
YAGPEFGYVPAQPVHKTPVNFNAMVPTAALFRNGAPEVINPVIVKPDRQHRHTLPPEPKR
Sbjct: 1021 YAGPEFGYVPAQPVHKTPVNFNAMVPTAALFRNGAPEVINPVIVKPDRQHRHTLPPEPKR 1080
Query: 1081 VDPDPQNGCSEDNKKPQDGSVPFSLFHFNLPISSPAQASSEDEVSGGCLASRSPTPSAQK 1140
VDPDPQNGCSEDNKKPQDGSVPFSLFHFNLPISSPAQASSEDEVSGGCLASRSPTPSAQK
Sbjct: 1081 VDPDPQNGCSEDNKKPQDGSVPFSLFHFNLPISSPAQASSEDEVSGGCLASRSPTPSAQK 1140
Query: 1141 AQPCSREETNIKEYNLFSARTGVEFPFF 1168
AQPCSREETNIKEYNLFSARTGVEFPFF
Sbjct: 1141 AQPCSREETNIKEYNLFSARTGVEFPFF 1168
>Os03g0226600 Conserved hypothetical protein
Length = 1176
Score = 1076 bits (2782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/1175 (50%), Positives = 740/1175 (62%), Gaps = 57/1175 (4%)
Query: 33 IWSRRRDEITFDRLDKFWSALSPQARHELLRIDKQTLIEHARRNLYCSRCNGLLLESFTQ 92
IWSRRRDEIT DRL KFW+ L PQAR ELL++DKQTLIE AR+NLYCSRCNGLLLESF Q
Sbjct: 18 IWSRRRDEITLDRLQKFWNGLPPQARQELLKLDKQTLIEQARKNLYCSRCNGLLLESFMQ 77
Query: 93 MVMHGKLLQQKGPGV--------------VQDDS----WGGLSTTKDGLLTLLDCFINTN 134
+VM+GK LQ+ + Q+D WGGL TKDG+LTLLDCF+N
Sbjct: 78 IVMYGKTLQRDASDINRLNTTGETRIRQGEQEDPSVHPWGGLVATKDGILTLLDCFVNAK 137
Query: 135 SLHVLQNIFDNARAREREREMLYPDACGGGERGWISPVIANYGRGHGTRDTCALHTARLS 194
SL VLQN+FDNARAREREREMLYPDACGG RGWIS +A+Y RG+GTR+TCALHTARLS
Sbjct: 138 SLRVLQNVFDNARAREREREMLYPDACGGSGRGWISQRLASYSRGYGTRETCALHTARLS 197
Query: 195 CDALVGYWFDLCEETRSSLLRMREEDFIERLMHRFDSKRFCRDCRRNVIREFXXXXXXXX 254
CD LV +W L EETR SLLRM+EEDF+ERLM RF+SKRFCRDCRRNVIREF
Sbjct: 198 CDTLVDFWSALSEETRLSLLRMKEEDFMERLMRRFESKRFCRDCRRNVIREFKELKELKR 257
Query: 255 XXXXHHCTSWFCITDTAFRCEVFEDAVLVDCRQSFLDQDKSYNRFEFAVGTEKGKSDILG 314
CTSWFC+ DT F+CEVFEDAV++D RQ+ + D SY+ FE+A+GT++G+SD+ G
Sbjct: 258 MRREPRCTSWFCVADTDFQCEVFEDAVIIDWRQTLSEADGSYHHFEWAIGTDEGQSDVFG 317
Query: 315 FEAVGMNGQVHRKGLDLDQFEDYFVTLRAHYADNKNTDFYVKAHALKGQSCVHRRLIVGD 374
FE VGMN QVHR G++LDQFEDYF+TLRA D T+ VKAHALKGQSCVH RL+VG+
Sbjct: 318 FEDVGMNVQVHRDGINLDQFEDYFITLRAWKLDGTYTELCVKAHALKGQSCVHHRLVVGN 377
Query: 375 GFVTITKGESIQSFFEHXXXXXXXXXXXXMDRDGNDTDVDGVHPQKHAKSPELAREFLLD 434
GFVTITKGESI+SFFEH MDRDGND D DG+HPQKHAKSPELAREFLLD
Sbjct: 378 GFVTITKGESIRSFFEHAEEAEEEDEEDAMDRDGNDLDGDGLHPQKHAKSPELAREFLLD 437
Query: 435 AAAVIFKEQVEKSLREATAQQNAHSVFVSLALKLLEERVHVACKEIIXXXXXXXXXXXXX 494
AAAVIFKEQVEK+ RE TA+QNAHS+FVSLAL+LLEERVHVACKEII
Sbjct: 438 AAAVIFKEQVEKAFREGTARQNAHSIFVSLALELLEERVHVACKEIITLEKQNKLLEEEE 497
Query: 495 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPVQLKPYIGTSSSPLSNSATPI 554
+ LK S S L NS T
Sbjct: 498 KEKQDEQERRMRRRTKEREKKHRRKERLKEKERDKGKEILGLKSSDDNSCSTLRNS-TST 556
Query: 555 NDQSPDIAHSKYSASDDEDKDSIVVTESFSPDTCVDQSLTRESDGQSNEFHCSTTLEFIP 614
ND+S + S+ SAS++ED ++V + SPDT VDQ+ RE Q+N +C+T EF
Sbjct: 557 NDESTNTPDSRDSASEEEDNSTVV--DLCSPDTFVDQTACREISVQNNMDYCNTLTEFAR 614
Query: 615 SDCNGSFMCEQSTSSRRKLRFRRDSLQEQTTGFWYEDCQDDTGGVGNIHWQSRERARNAG 674
++ + F QS SSR LR R+D Q+Q++ Y++C D+ G +G+ WQS+ER R++
Sbjct: 615 TNSSDLFTSGQSKSSRWNLRLRKDFPQDQSS-CCYDECGDENGSIGDFQWQSKERTRHSA 673
Query: 675 RGCNSLFSANNRTRERYEYNACSCGQQEDY----GYFSPTARSSREMKMSRKTMVEKPWL 730
R CNS+F+ NNRTR+R+ Y + SC ++DY S + S RE KM+RKT VE+P +
Sbjct: 674 RSCNSVFTTNNRTRDRHNYISFSCDPRDDYVINDSCSSSSTGSGRETKMARKTGVERPRV 733
Query: 731 QYRRCYPLDSFIVSKGSRVGSTPNKNAAPKQVWEPMDARKKASLGSSNGSSETVSGVDRS 790
QYRRCYPLD+FIVSK SR G+T KN APKQVWEPMD++KK L + N S V VD +
Sbjct: 734 QYRRCYPLDNFIVSKESRTGNTQQKNGAPKQVWEPMDSQKKNLLDNKNNGSGAVCNVDPT 793
Query: 791 NQVGCSKDIVNCSQILGSEHEELAEA-------CKSITDQPCESSENNQAACNSEPPVVN 843
V +D C + HE L+++ CKS TDQPCE++E NQA +V+
Sbjct: 794 KLV--EQDSSECPN-FDAGHEPLSQSSERSRDICKSETDQPCENNEKNQATSCGGTIMVD 850
Query: 844 KPDSCFTKDGG-------QTANMTXXXXXXXXXEGDRDXXXXXXXXXXAQNPXXXXXXXX 896
K D TKD G + + E DR+ AQ+
Sbjct: 851 KQDCYSTKDEGSGHDEELMMNSTSSDGLSSCTSEADRESSTSSVTSLSAQH-QESSSSDS 909
Query: 897 XXXXXRNNSNPGNPPTKNGSRSLLEMCAGNGFREYQPQNIHPSDGNQFGFGVTPFQEQLL 956
R NS P TK SRSLLE CAG GFREYQP+ +H ++ GF + PFQ+QLL
Sbjct: 910 EESPERVNSIEEAPSTKTVSRSLLEACAGKGFREYQPKAMHRPHNDRLGFNIPPFQDQLL 969
Query: 957 HQQKIHAAPYPSTLMGFHNHHMSVPTNGYLAYPQPGHFYPNAVGYGVAGNQCVDFPMQYS 1016
H Q +H + S MG HNH + P +GY+ Y QP HFY N +G+GV G Q DFP+QYS
Sbjct: 970 HHQSMHVPTHSSATMGLHNHPWAAPASGYMQYAQPSHFYSNPLGFGVPGKQSPDFPVQYS 1029
Query: 1017 NVHPYAGPEFGYVPAQPVHKTPVNFNAMVPTAALFRNGAPEVINPVIVKPDRQ---HRHT 1073
NVH + P F Y P +P+ KT +F M T+ +RNG + + + P RH
Sbjct: 1030 NVHHFPAPAFSYAPPEPIRKTTPSFRVM-HTSPPYRNGLHQ--SQTVGHPHGDPTLERH- 1085
Query: 1074 LPPEPKRVDPDPQNGCSEDNKKPQDGSVPFSLFHFNLPISSPAQASSEDEVSGGCLASRS 1133
P +PK +D G +NK +G+ FSLF FNLPI+ PA SS+D+ SG A+R+
Sbjct: 1086 -PSQPKPLDLKDAPG---ENKSSPEGNASFSLFQFNLPIAPPAPPSSKDDTSGES-ATRT 1140
Query: 1134 PTPSAQKAQPCSREETNIKEYNLFSARTGVEFPFF 1168
P Q QPCSRE+T++KEYNLF ++ G F F
Sbjct: 1141 PLAQVQ-VQPCSREQTDVKEYNLFCSKNGSMFSFI 1174
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 39,757,374
Number of extensions: 1755153
Number of successful extensions: 4425
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4411
Number of HSP's successfully gapped: 4
Length of query: 1168
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1056
Effective length of database: 11,187,833
Effective search space: 11814351648
Effective search space used: 11814351648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 162 (67.0 bits)