Os10g0105400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0105400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.65 | 0.247 | 11.1 | 0.596 | 1.12 | 1.23 | 0.201 | -0.744 | 0.155 | 19.6 | 0.35 | 741 | -- | -- |
| 28.1 | 0.247 | 11.1 | 0.608 | 1.14 | 1.25 | 0.541 | -- | 0.16 | 19.7 | 0.3596 | 759 | -- | -- |
| 26.74 | 0.241 | 11.1 | 0.609 | 1.06 | 1.09 | -- | -1.1 | 0.156 | 21 | 0.4504 | 931 | -- | -- |
| 27.86 | 0.246 | 11.1 | 0.635 | 1.16 | 1.28 | -- | -- | 0.184 | 21 | 0.35 | 952 | -- | -- |
| 33.21 | 0.27 | 11.1 | 0.478 | -- | 0.365 | -- | -0.046 | 0.106 | -- | 0.4504 | 931 | -- | -- |
| 32.07 | 0.265 | 11.1 | 0.458 | 0.505 | -- | 0.0701 | -- | 0.101 | 23.5 | -- | -- | -- | -- |
| 32.09 | 0.265 | 11.1 | 0.455 | 0.505 | -- | -- | -- | 0.101 | 23.5 | -- | -- | -- | -- |
| 32.78 | 0.268 | 11.1 | 0.481 | -- | 0.37 | -- | -- | 0.104 | -- | 0.2981 | 11860 | -- | -- |
| 36.33 | 0.281 | 11.1 | -- | 1.13 | 1.16 | -- | -- | 0.0985 | 21 | 0.98 | 928 | -- | -- |
| 48.08 | 0.324 | 11.1 | 0.468 | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
| 37.54 | 0.287 | 11.1 | -- | 0.51 | -- | -- | -- | 0.0499 | 23.6 | -- | -- | -- | -- |
| 38.88 | 0.291 | 11.1 | -- | -- | 0.367 | -- | -- | 0.0504 | -- | 0.2981 | 11860 | -- | -- |
| 53.86 | 0.343 | 11.1 | -- | -- | -- | -- | -- | 0.0541 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.12 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 2 | 27.18 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 22 |
| 3 | 27.18 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 4 | 27.29 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 6 | 27.44 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 16 | 27.62 | radiation | 1 | 1440 | > th | dose independent | sin | 17 | NA |
| 18 | 27.63 | radiation | 1 | 1440 | < th | dose independent | sin | 17 | NA |
| 23 | 27.65 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 25 | 27.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 7 |
| 26 | 27.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 28 | 27.67 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 59 | 27.68 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 88 | 27.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 209 | 27.78 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 213 | 27.79 | humidity | 90 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 214 | 27.79 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 220 | 27.81 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 22 |
| 229 | 27.84 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 233 | 27.85 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 240 | 27.85 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 249 | 27.86 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 269 | 27.90 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 3 |
| 278 | 27.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 280 | 27.91 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 282 | 27.92 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 285 | 27.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 291 | 27.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 293 | 27.93 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 18 |
| 313 | 27.95 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 23 |
| 325 | 27.96 | radiation | 1 | 720 | > th | dose independent | sin | 13 | NA |
| 333 | 27.96 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 344 | 27.96 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 16 |
| 349 | 27.97 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 374 | 27.98 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 388 | 27.99 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 413 | 28.02 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 415 | 28.02 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 474 | 28.02 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 23 |
| 483 | 28.02 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 500 | 28.04 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 511 | 28.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 518 | 28.06 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 16 |
| 520 | 28.06 | humidity | 90 | 30 | > th | dose independent | rect. | 3 | 23 |
| 521 | 28.06 | radiation | 10 | 1440 | < th | dose dependent | rect. | 14 | 3 |
| 537 | 28.08 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 541 | 28.09 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 542 | 28.09 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 544 | 28.09 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 555 | 28.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 585 | 28.13 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 631 | 28.18 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 676 | 28.20 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 16 |
| 694 | 28.21 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 699 | 28.22 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 719 | 28.23 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 817 | 28.27 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 828 | 28.27 | humidity | 90 | 90 | > th | dose dependent | rect. | 17 | 19 |
| 853 | 28.28 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 882 | 28.29 | humidity | 90 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 898 | 28.30 | humidity | 90 | 90 | > th | dose dependent | no | NA | NA |
| 907 | 28.30 | humidity | 90 | 90 | > th | dose dependent | rect. | 19 | 17 |
| 914 | 28.30 | humidity | 90 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 926 | 28.31 | humidity | 90 | 90 | < th | dose independent | rect. | 5 | 22 |
| 996 | 28.33 | humidity | 80 | 30 | > th | dose dependent | rect. | 3 | 23 |