BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0570900 Os09g0570900|AK071292
         (427 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0570900  Amino acid-binding ACT domain containing protein    801   0.0  
Os05g0113000  Amino acid-binding ACT domain containing protein    357   9e-99
AK072967                                                          281   8e-76

>Os09g0570900 Amino acid-binding ACT domain containing protein
          Length = 427

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/427 (92%), Positives = 395/427 (92%)

Query: 1   MGIPNPSDEVVQVRHGDVAGEPTVVTISCPDKTGLGCDLCRLVLLFGLNIVKGDMSTDGR 60
           MGIPNPSDEVVQVRHGDVAGEPTVVTISCPDKTGLGCDLCRLVLLFGLNIVKGDMSTDGR
Sbjct: 1   MGIPNPSDEVVQVRHGDVAGEPTVVTISCPDKTGLGCDLCRLVLLFGLNIVKGDMSTDGR 60

Query: 61  WCYIVLWVVARPGRAMAMRWDLLKDRLIQLCPVAAPFGXXXXXXXXXXXXXXXXXXXXPS 120
           WCYIVLWVVARPGRAMAMRWDLLKDRLIQLCPVAAPFG                    PS
Sbjct: 61  WCYIVLWVVARPGRAMAMRWDLLKDRLIQLCPVAAPFGLDNHHLAAAGLHLHDHDAPAPS 120

Query: 121 PNIFLLKFFCYDRMGLLHDVTRVLCELELTIRRVKVSTTPDGRVLDLFFITDARELLHTK 180
           PNIFLLKFFCYDRMGLLHDVTRVLCELELTIRRVKVSTTPDGRVLDLFFITDARELLHTK
Sbjct: 121 PNIFLLKFFCYDRMGLLHDVTRVLCELELTIRRVKVSTTPDGRVLDLFFITDARELLHTK 180

Query: 181 SRREETYDKLQSVLGDSLTSCEIESATEEMSSCLQASTLLPHSAXXXXXXXXXXXXQSRS 240
           SRREETYDKLQSVLGDSLTSCEIESATEEMSSCLQASTLLPHSA            QSRS
Sbjct: 181 SRREETYDKLQSVLGDSLTSCEIESATEEMSSCLQASTLLPHSAVEEMFNVEVVEEQSRS 240

Query: 241 CGGLSVAMDNSLSPAHTLIQIQCGDHKGLVYDIMRTLKDCNIQISYGRFYASQNGSCEVD 300
           CGGLSVAMDNSLSPAHTLIQIQCGDHKGLVYDIMRTLKDCNIQISYGRFYASQNGSCEVD
Sbjct: 241 CGGLSVAMDNSLSPAHTLIQIQCGDHKGLVYDIMRTLKDCNIQISYGRFYASQNGSCEVD 300

Query: 301 LFAVQSDGKKIVDQHKQRALCCRLRTELHRPLRVALVNRGPDTELLVANPVEVSGKGRPL 360
           LFAVQSDGKKIVDQHKQRALCCRLRTELHRPLRVALVNRGPDTELLVANPVEVSGKGRPL
Sbjct: 301 LFAVQSDGKKIVDQHKQRALCCRLRTELHRPLRVALVNRGPDTELLVANPVEVSGKGRPL 360

Query: 361 VFYDITLALKKLHKRIFLAEIGRHVVGDREWEVYRVHLGEGDHSSLRSKIVDGVTNMLMG 420
           VFYDITLALKKLHKRIFLAEIGRHVVGDREWEVYRVHLGEGDHSSLRSKIVDGVTNMLMG
Sbjct: 361 VFYDITLALKKLHKRIFLAEIGRHVVGDREWEVYRVHLGEGDHSSLRSKIVDGVTNMLMG 420

Query: 421 WDDTPPS 427
           WDDTPPS
Sbjct: 421 WDDTPPS 427



>Os05g0113000 Amino acid-binding ACT domain containing protein
          Length = 458

 Score =  357 bits (916), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 204/423 (48%), Positives = 261/423 (61%), Gaps = 37/423 (8%)

Query: 8   DEVVQVRHGDVAGEPTVVTISCPDKTGLGCDLCRLVLLFGLNIVKG-DMSTDGRWCYIVL 66
           ++ V ++     G+ +V+TI+CPD+ GLGCDLCR +L FGL I +G D+STDG+WC++V 
Sbjct: 31  EDAVVMQVAGAEGQDSVITINCPDQAGLGCDLCRTILEFGLRITRGADVSTDGQWCFVVF 90

Query: 67  WVVARPGRAMAMRWDLLKDRLIQLCPVAAPFGXXXXXXXXXXXXXXXXXXXXPSPNIF-L 125
           WVV R   ++ +RW  LK+RL+ +CP   P                      P P+ F L
Sbjct: 91  WVVPRTP-SIKVRWANLKNRLMSMCPSNYPM-------------TFYPEITQPGPSQFYL 136

Query: 126 LKFFCYDRMGLLHDVTRVLCELELTIRRVKVSTTPDGRVLDLFFITDARELLHTKSRREE 185
           LK F  DR GLLHDVT +L ELEL I RVKVSTTPDGRV+DLFFITD  ELLHTK R+EE
Sbjct: 137 LKLFSADRKGLLHDVTHILSELELIIHRVKVSTTPDGRVIDLFFITDGMELLHTKERQEE 196

Query: 186 TYDKLQSVLGDSLTSCEIESATEEMSSCLQASTLLPHSAXXXXXXXXXXXXQ--SRS-CG 242
           T   L + LG S+ SCEI  A        Q  + LP +                SRS C 
Sbjct: 197 TCSMLIATLGPSI-SCEILLA----EGFQQGFSSLPPTISEELFRLELADGDNCSRSICA 251

Query: 243 GL------SVAMDNSLSPAHTLIQIQCGDHKGLVYDIMRTLKDCNIQISYGRFYASQNGS 296
            +      ++  DN+LSPAHTL+QI C D KGL+YDI+RT+KDC+IQ++YGRF++ + G 
Sbjct: 252 EMKRVQKATINFDNTLSPAHTLLQINCADQKGLLYDILRTMKDCSIQVTYGRFWSDKKGF 311

Query: 297 CEVDLFAVQSDGKKIVDQHKQRALCCRLRTELHRPLRVALVNRGPDTELLVANPVEVSGK 356
            EVDLF  Q+DGKKI+D  KQ  L  RLR+E+  PLRV +VNRGPD ELLVANPVE+SGK
Sbjct: 312 REVDLFIKQADGKKIIDPEKQDVLSSRLRSEMLHPLRVMIVNRGPDVELLVANPVELSGK 371

Query: 357 GRPLVFYDITLALKKLHKRIF---LAEIGRHVVGDREWEV----YRVHLGEGDHSSLRSK 409
           GRP VFYD T ALK L   IF   + E    V  +  + +    +R+ LG   H S+  +
Sbjct: 372 GRPRVFYDATFALKALGICIFSVRITEYSERVQNEFVFTLLLMHFRLKLGGRQHQSVNGR 431

Query: 410 IVD 412
             D
Sbjct: 432 STD 434



>AK072967 
          Length = 361

 Score =  281 bits (718), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 153/322 (47%), Positives = 199/322 (61%), Gaps = 21/322 (6%)

Query: 8   DEVVQVRHGDVAGEPTVVTISCPDKTGLGCDLCRLVLLFGLNIVKGDMSTDGRWCYIVLW 67
           ++ V ++     G+ +V+TI+CPD+ GLGCDLCR +L FGL I +GD+STDG+WC++V W
Sbjct: 31  EDAVVMQVAGAEGQDSVITINCPDQAGLGCDLCRTILEFGLRITRGDVSTDGQWCFVVFW 90

Query: 68  VVARPGRAMAMRWDLLKDRLIQLCPVAAPFGXXXXXXXXXXXXXXXXXXXXPSPNIF-LL 126
           VV R   ++ +RW  LK+RL+ +CP   P                      P P+ F LL
Sbjct: 91  VVPR-TPSIKVRWANLKNRLMSMCPSNYPM-------------TFYPEITQPGPSQFYLL 136

Query: 127 KFFCYDRMGLLHDVTRVLCELELTIRRVKVSTTPDGRVLDLFFITDARELLHTKSRREET 186
           K F  DR GLLHDVT +L ELEL I RVKVSTTPDGRV+DLFFITD  ELLHTK R+EET
Sbjct: 137 KLFSADRKGLLHDVTHILSELELIIHRVKVSTTPDGRVIDLFFITDGMELLHTKERQEET 196

Query: 187 YDKLQSVLGDSLTSCEI---ESATEEMSSCLQ--ASTLLPHSAXXXXXXXXXXXXQSRSC 241
              L + LG S+ SCEI   E   +  SS     +  L                 + +  
Sbjct: 197 CSMLIATLGPSI-SCEILLAEGFQQGFSSLPPTISEELFRLELADGDNCSRSICAEMKRV 255

Query: 242 GGLSVAMDNSLSPAHTLIQIQCGDHKGLVYDIMRTLKDCNIQISYGRFYASQNGSCEVDL 301
              ++  DN+LSPAHTL+QI C D KGL+YDI+RT+KDC+IQ++YGRF++ + G  EVDL
Sbjct: 256 QKATINFDNTLSPAHTLLQINCADQKGLLYDILRTMKDCSIQVTYGRFWSDKKGFREVDL 315

Query: 302 FAVQSDGKKIVDQHKQRALCCR 323
           F  Q+DGKKI+D  KQ  L  R
Sbjct: 316 FIKQADGKKIIDPEKQDVLSSR 337



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,058,101
Number of extensions: 539660
Number of successful extensions: 1066
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1057
Number of HSP's successfully gapped: 5
Length of query: 427
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 323
Effective length of database: 11,605,545
Effective search space: 3748591035
Effective search space used: 3748591035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)