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Os09g0570900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amino acid-binding ACT domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.96 (0.0198) R2 : 0.866
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.93 (0.0542) R2dC : 0.962 R2C : 0.767
β3 : -1.3 (0.0774) R2dE : 0.0927 R2E : -0.112
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.194 (0.0416) R2dN8 : 0.00804 R2N8 : 0.00732
σ : 0.371
deviance : 63.46
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_____
C
peak time of C : 16.7
E
wheather : radiation
threshold : 2.704
memory length : 79
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 15.7
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.75 0.363 9.97 -0.107 2.95 -1.31 -0.584 1.63 -0.207 16.7 3.821 85 15.6 --
63.19 0.37 9.96 -0.0859 2.92 -1.31 -0.239 -- -0.19 16.7 2.626 79 15.8 --
60.5 0.362 9.97 -0.102 2.96 -1.32 -- 1.35 -0.205 16.8 3.803 85 15.4 --
63.23 0.37 9.96 -0.085 2.92 -1.3 -- -- -0.2 16.7 2.653 79 15.7 --
137.93 0.547 9.91 -0.992 -- -2.73 -- 2.31 0.0864 -- 0.6223 674 9.57 --
87.49 0.438 9.94 -0.0411 2.64 -- -0.176 -- -0.181 16 -- -- -- --
87.58 0.438 9.94 -0.0434 2.64 -- -- -- -0.182 16 -- -- -- --
90.08 0.442 9.95 -0.196 -- -3.3 -- -- -0.253 -- 0.9315 741 10.8 --
63.46 0.371 9.96 -- 2.93 -1.3 -- -- -0.194 16.7 2.704 79 15.7 --
468.86 1.01 9.93 -0.151 -- -- -- -- -0.253 -- -- -- -- --
87.63 0.438 9.94 -- 2.64 -- -- -- -0.177 16 -- -- -- --
90.33 0.443 9.93 -- -- -3.2 -- -- -0.239 -- 1.5 727 10.2 --
469.47 1.01 9.93 -- -- -- -- -- -0.236 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.94 radiation 40.0 270 < th dose dependent rect. 15 17
2 56.98 radiation 20.0 270 < th dose independent rect. 16 16
4 57.30 radiation 40.0 270 < th dose independent rect. 14 7
6 57.49 temperature 10.0 270 > th dose independent rect. 15 6
7 57.49 temperature 10.0 270 > th dose independent rect. 21 18
10 57.57 precipitation 0.1 270 < th dose independent rect. 21 18
11 57.57 precipitation 0.1 270 < th dose dependent rect. 21 18
12 57.60 atmosphere 995.0 270 > th dose independent rect. 21 18
17 57.85 temperature 10.0 270 > th dose independent rect. 8 8
18 57.85 atmosphere 1015.0 270 < th dose independent rect. 8 8
19 57.85 temperature 10.0 270 > th dose independent rect. 16 16
20 57.85 radiation 40.0 270 < th dose dependent rect. 15 5
21 57.95 atmosphere 1015.0 270 < th dose independent rect. 15 6
22 58.00 wind 1.0 270 > th dose independent rect. 15 6
24 58.03 precipitation 0.1 270 < th dose independent rect. 8 8
26 58.03 precipitation 0.1 270 < th dose dependent rect. 8 8
27 58.05 wind 9.0 270 < th dose independent rect. 8 8
28 58.07 wind 9.0 270 < th dose independent rect. 21 18
30 58.11 temperature 10.0 270 > th dose independent rect. 9 6
31 58.11 atmosphere 1015.0 270 < th dose independent rect. 9 6
32 58.11 temperature 10.0 270 > th dose independent rect. 15 18
33 58.28 atmosphere 995.0 270 > th dose independent rect. 9 6
34 58.29 precipitation 0.1 270 < th dose independent rect. 9 6
35 58.29 precipitation 0.1 270 < th dose dependent rect. 9 6
36 58.31 humidity 50.0 270 > th dose independent rect. 15 5
46 58.47 humidity 50.0 270 > th dose independent rect. 15 17
56 58.57 atmosphere 995.0 270 > th dose independent rect. 8 8
57 58.58 wind 9.0 270 < th dose independent rect. 9 6
58 58.58 wind 9.0 270 < th dose independent rect. 15 6
60 58.59 precipitation 0.1 270 < th dose independent rect. 15 6
61 58.59 precipitation 0.1 270 < th dose dependent rect. 15 6
62 58.60 wind 9.0 270 < th dose independent rect. 16 16
66 58.70 wind 1.0 270 > th dose independent rect. 9 6
71 58.79 atmosphere 995.0 270 > th dose independent rect. 15 6
74 58.87 atmosphere 995.0 270 > th dose independent rect. 16 16
80 59.08 radiation 1.0 270 > th dose independent rect. 9 6
82 59.11 wind 9.0 270 < th dose independent rect. 15 18
84 59.15 temperature 10.0 270 > th dose dependent rect. 2 8
85 59.17 humidity 50.0 270 > th dose independent rect. 14 7
90 59.31 temperature 15.0 270 > th dose independent rect. 4 16
96 59.36 atmosphere 995.0 270 > th dose independent rect. 15 18
97 59.37 humidity 50.0 270 > th dose independent rect. 21 18
102 59.46 radiation 1.0 30 > th dose independent rect. 11 8
120 59.56 precipitation 0.1 270 < th dose independent rect. 15 18
121 59.56 precipitation 0.1 270 < th dose dependent rect. 15 18
123 59.68 precipitation 0.1 270 < th dose independent rect. 16 16
124 59.68 precipitation 0.1 270 < th dose dependent rect. 16 16
125 59.71 humidity 50.0 270 > th dose independent rect. 9 6
142 60.01 radiation 1.0 270 > th dose independent rect. 8 8
147 60.14 humidity 60.0 30 > th dose independent rect. 17 18
183 60.54 atmosphere 1015.0 270 < th dose independent rect. 21 18
214 60.92 humidity 60.0 270 > th dose independent rect. 1 9
221 61.08 temperature 15.0 270 > th dose independent rect. 1 9
222 61.09 radiation 1.0 90 > th dose independent sin 22 NA
234 61.26 temperature 10.0 270 > th dose independent rect. 20 8
235 61.26 temperature 30.0 270 < th dose independent rect. 20 8
236 61.26 humidity 50.0 270 > th dose independent rect. 20 8
239 61.26 atmosphere 995.0 270 > th dose independent rect. 20 8
240 61.26 radiation 1.0 270 < th dose independent rect. 20 8
247 61.26 atmosphere 1015.0 270 < th dose independent rect. 4 16
248 61.26 radiation 1.0 270 < th dose dependent rect. 20 8
253 61.28 radiation 1.0 90 < th dose independent sin 22 NA
254 61.28 wind 9.0 270 < th dose independent rect. 20 8
258 61.31 wind 7.0 270 < th dose independent rect. 1 9
273 61.48 wind 9.0 270 < th dose independent rect. 10 15
287 61.52 precipitation 0.1 270 < th dose independent rect. 20 8
289 61.52 precipitation 0.1 270 < th dose dependent rect. 20 8
291 61.54 radiation 10.0 90 < th dose dependent sin 21 NA
343 61.82 radiation 10.0 90 < th dose dependent rect. 6 16
358 61.90 humidity 50.0 270 > th dose independent rect. 3 17
362 61.95 precipitation 0.1 270 < th dose independent rect. 10 15
364 61.95 precipitation 0.1 270 < th dose dependent rect. 10 15
370 61.99 temperature 10.0 1440 > th dose independent rect. 12 6
375 61.99 atmosphere 995.0 270 > th dose independent rect. 1 9
376 61.99 atmosphere 1015.0 270 < th dose independent rect. 1 9
377 61.99 temperature 10.0 270 > th dose independent rect. 10 15
378 61.99 temperature 10.0 1440 > th dose independent rect. 18 18
416 62.17 radiation 1.0 30 < th dose independent rect. 6 16
421 62.23 precipitation 0.1 90 < th dose independent rect. 11 6
423 62.23 precipitation 0.1 90 < th dose dependent rect. 11 6
443 62.31 temperature 10.0 90 > th dose independent rect. 11 6
444 62.31 atmosphere 1015.0 90 < th dose independent rect. 11 6
477 62.42 precipitation 0.1 270 < th dose independent rect. 4 16
478 62.42 precipitation 0.1 270 < th dose dependent rect. 4 16
491 62.50 wind 1.0 90 > th dose independent rect. 11 6
497 62.52 wind 9.0 270 < th dose independent rect. 4 16
511 62.57 atmosphere 995.0 30 > th dose independent rect. 11 6
513 62.59 precipitation 0.1 270 < th dose independent rect. 1 9
514 62.59 precipitation 0.1 270 < th dose dependent rect. 1 9
533 62.71 wind 1.0 10 > th dose independent rect. 11 6
539 62.72 humidity 50.0 270 > th dose dependent rect. 2 8
542 62.74 temperature 30.0 30 < th dose independent rect. 17 18
556 62.79 temperature 30.0 90 < th dose independent rect. 17 16
567 62.84 radiation 1.0 10 < th dose dependent rect. 16 6
569 62.84 radiation 1.0 10 < th dose dependent rect. 13 9
571 62.85 wind 9.0 90 < th dose independent rect. 11 6
602 62.94 radiation 1.0 30 < th dose independent rect. 13 9
627 63.01 radiation 1.0 30 < th dose independent rect. 16 6
633 63.03 temperature 30.0 270 < th dose independent rect. 15 5
639 63.06 precipitation 0.1 30 < th dose independent rect. 17 18
640 63.06 precipitation 0.1 30 < th dose dependent rect. 17 18
646 63.12 atmosphere 1015.0 270 < th dose independent rect. 15 17
669 63.19 atmosphere 995.0 270 > th dose independent rect. 3 17
682 63.22 radiation 40.0 270 < th dose independent rect. 2 7
688 63.23 wind 1.0 270 > th dose independent rect. 21 18
704 63.28 atmosphere 995.0 270 > th dose dependent rect. 15 5
765 63.47 atmosphere 1015.0 270 < th dose dependent rect. 15 5
784 63.53 temperature 30.0 10 < th dose independent rect. 17 5
894 63.88 wind 1.0 270 > th dose independent rect. 15 17
912 63.90 wind 1.0 270 > th dose dependent rect. 15 5
958 64.03 humidity 60.0 10 > th dose independent rect. 17 5
962 64.05 temperature 30.0 270 < th dose independent rect. 2 7