Os05g0113000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amino acid-binding ACT domain containing protein.
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Os05g0113000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amino acid-binding ACT domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.69 | 0.328 | 11.7 | -0.104 | 2.54 | 0.551 | 1.13 | -0.891 | -0.181 | 5.44 | 25.7 | 1177 | -- | -- |
| 49.62 | 0.328 | 11.6 | 0.134 | 2.56 | 0.508 | 1.07 | -- | -0.138 | 5.37 | 25.6 | 1217 | -- | -- |
| 51.81 | 0.335 | 11.7 | -0.0645 | 2.55 | 0.537 | -- | -0.77 | -0.171 | 5.41 | 25.7 | 1174 | -- | -- |
| 52.24 | 0.337 | 11.6 | 0.146 | 2.55 | 0.482 | -- | -- | -0.0985 | 5.36 | 25.64 | 1264 | -- | -- |
| 323.13 | 0.842 | 11.6 | 0.619 | -- | -0.936 | -- | 0.265 | 0.464 | -- | 25.7 | 1174 | -- | -- |
| 55.65 | 0.35 | 11.6 | 0.288 | 2.6 | -- | 1.05 | -- | 0.0663 | 5.28 | -- | -- | -- | -- |
| 58.42 | 0.358 | 11.6 | 0.289 | 2.6 | -- | -- | -- | 0.0613 | 5.26 | -- | -- | -- | -- |
| 323.43 | 0.841 | 11.6 | 0.555 | -- | -0.929 | -- | -- | 0.446 | -- | 25.7 | 1174 | -- | -- |
| 52.78 | 0.338 | 11.6 | -- | 2.55 | 0.504 | -- | -- | -0.11 | 5.36 | 25.6 | 1267 | -- | -- |
| 412.05 | 0.949 | 11.6 | 0.379 | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
| 60.62 | 0.364 | 11.6 | -- | 2.61 | -- | -- | -- | 0.0291 | 5.26 | -- | -- | -- | -- |
| 331.49 | 0.851 | 11.6 | -- | -- | -0.902 | -- | -- | 0.375 | -- | 25.7 | 1174 | -- | -- |
| 415.84 | 0.952 | 11.6 | -- | -- | -- | -- | -- | 0.0843 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.73 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 12 |
| 6 | 45.18 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 12 | 45.44 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 9 |
| 49 | 46.08 | temperature | 25.0 | 720 | > th | dose independent | sin | 13 | NA |
| 50 | 46.08 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 13 |
| 54 | 46.12 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 77 | 46.34 | temperature | 25.0 | 720 | < th | dose independent | sin | 12 | NA |
| 95 | 46.51 | temperature | 25.0 | 720 | < th | dose independent | rect. | 20 | 7 |
| 102 | 46.56 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 104 | 46.58 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 13 |
| 105 | 46.59 | humidity | 90.0 | 720 | > th | dose independent | rect. | 22 | 2 |
| 185 | 47.02 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 210 | 47.13 | temperature | 25.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 237 | 47.25 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 269 | 47.43 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 21 | 8 |
| 282 | 47.49 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 335 | 47.67 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 4 |
| 352 | 47.72 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 375 | 47.82 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 386 | 47.85 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 420 | 47.94 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 19 | 13 |
| 443 | 48.01 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 15 |
| 446 | 48.02 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 10 |
| 449 | 48.02 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 505 | 48.18 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 515 | 48.21 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 527 | 48.24 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 14 |
| 533 | 48.24 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 14 |
| 535 | 48.25 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 544 | 48.27 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 12 |
| 594 | 48.42 | temperature | 25.0 | 720 | < th | dose independent | rect. | 22 | 1 |
| 603 | 48.43 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 3 |
| 626 | 48.49 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 12 |
| 628 | 48.49 | temperature | 10.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 630 | 48.49 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 12 |
| 634 | 48.50 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 19 |
| 637 | 48.50 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 638 | 48.51 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 1 |
| 692 | 48.64 | wind | 5.0 | 720 | < th | dose independent | rect. | 24 | 5 |
| 733 | 48.71 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 734 | 48.71 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 10 | 19 |
| 779 | 48.80 | temperature | 20.0 | 30 | > th | dose independent | rect. | 10 | 19 |
| 916 | 49.05 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 1 |
| 922 | 49.06 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 942 | 49.08 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 945 | 49.09 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 6 |
| 956 | 49.11 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 960 | 49.11 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 10 | 19 |
| 990 | 49.15 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 10 | 19 |
| 991 | 49.15 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 8 | 21 |
| 993 | 49.15 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 8 | 21 |