BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0113000 Os05g0113000|AK067079
         (458 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0113000  Amino acid-binding ACT domain containing protein    907   0.0  
AK072967                                                          654   0.0  
Os09g0570900  Amino acid-binding ACT domain containing protein    374   e-103

>Os05g0113000 Amino acid-binding ACT domain containing protein
          Length = 458

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/458 (96%), Positives = 441/458 (96%)

Query: 1   MPPVGEVAAAEARSGMVLXXXXXXXXXXXXXXXXXMQVAGAEGQDSVITINCPDQAGLGC 60
           MPPVGEVAAAEARSGMVL                 MQVAGAEGQDSVITINCPDQAGLGC
Sbjct: 1   MPPVGEVAAAEARSGMVLGGGAAAAAVGGGEDAVVMQVAGAEGQDSVITINCPDQAGLGC 60

Query: 61  DLCRTILEFGLRITRGADVSTDGQWCFVVFWVVPRTPSIKVRWANLKNRLMSMCPSNYPM 120
           DLCRTILEFGLRITRGADVSTDGQWCFVVFWVVPRTPSIKVRWANLKNRLMSMCPSNYPM
Sbjct: 61  DLCRTILEFGLRITRGADVSTDGQWCFVVFWVVPRTPSIKVRWANLKNRLMSMCPSNYPM 120

Query: 121 TFYPEITQPGPSQFYLLKLFSADRKGLLHDVTHILSELELIIHRVKVSTTPDGRVIDLFF 180
           TFYPEITQPGPSQFYLLKLFSADRKGLLHDVTHILSELELIIHRVKVSTTPDGRVIDLFF
Sbjct: 121 TFYPEITQPGPSQFYLLKLFSADRKGLLHDVTHILSELELIIHRVKVSTTPDGRVIDLFF 180

Query: 181 ITDGMELLHTKERQEETCSMLIATLGPSISCEILLAEGFQQGFSSLPPTISEELFRLELA 240
           ITDGMELLHTKERQEETCSMLIATLGPSISCEILLAEGFQQGFSSLPPTISEELFRLELA
Sbjct: 181 ITDGMELLHTKERQEETCSMLIATLGPSISCEILLAEGFQQGFSSLPPTISEELFRLELA 240

Query: 241 DGDNCSRSICAEMKRVQKATINFDNTLSPAHTLLQINCADQKGLLYDILRTMKDCSIQVT 300
           DGDNCSRSICAEMKRVQKATINFDNTLSPAHTLLQINCADQKGLLYDILRTMKDCSIQVT
Sbjct: 241 DGDNCSRSICAEMKRVQKATINFDNTLSPAHTLLQINCADQKGLLYDILRTMKDCSIQVT 300

Query: 301 YGRFWSDKKGFREVDLFIKQADGKKIIDPEKQDVLSSRLRSEMLHPLRVMIVNRGPDVEL 360
           YGRFWSDKKGFREVDLFIKQADGKKIIDPEKQDVLSSRLRSEMLHPLRVMIVNRGPDVEL
Sbjct: 301 YGRFWSDKKGFREVDLFIKQADGKKIIDPEKQDVLSSRLRSEMLHPLRVMIVNRGPDVEL 360

Query: 361 LVANPVELSGKGRPRVFYDATFALKALGICIFSVRITEYSERVQNEFVFTLLLMHFRLKL 420
           LVANPVELSGKGRPRVFYDATFALKALGICIFSVRITEYSERVQNEFVFTLLLMHFRLKL
Sbjct: 361 LVANPVELSGKGRPRVFYDATFALKALGICIFSVRITEYSERVQNEFVFTLLLMHFRLKL 420

Query: 421 GGRQHQSVNGRSTDSSWMIAVSSHCQTALSIGTVLSTG 458
           GGRQHQSVNGRSTDSSWMIAVSSHCQTALSIGTVLSTG
Sbjct: 421 GGRQHQSVNGRSTDSSWMIAVSSHCQTALSIGTVLSTG 458



>AK072967 
          Length = 361

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/338 (94%), Positives = 320/338 (94%), Gaps = 1/338 (0%)

Query: 1   MPPVGEVAAAEARSGMVLXXXXXXXXXXXXXXXXXMQVAGAEGQDSVITINCPDQAGLGC 60
           MPPVGEVAAAEARSGMVL                 MQVAGAEGQDSVITINCPDQAGLGC
Sbjct: 1   MPPVGEVAAAEARSGMVLGGGAAAAAVGGGEDAVVMQVAGAEGQDSVITINCPDQAGLGC 60

Query: 61  DLCRTILEFGLRITRGADVSTDGQWCFVVFWVVPRTPSIKVRWANLKNRLMSMCPSNYPM 120
           DLCRTILEFGLRITRG DVSTDGQWCFVVFWVVPRTPSIKVRWANLKNRLMSMCPSNYPM
Sbjct: 61  DLCRTILEFGLRITRG-DVSTDGQWCFVVFWVVPRTPSIKVRWANLKNRLMSMCPSNYPM 119

Query: 121 TFYPEITQPGPSQFYLLKLFSADRKGLLHDVTHILSELELIIHRVKVSTTPDGRVIDLFF 180
           TFYPEITQPGPSQFYLLKLFSADRKGLLHDVTHILSELELIIHRVKVSTTPDGRVIDLFF
Sbjct: 120 TFYPEITQPGPSQFYLLKLFSADRKGLLHDVTHILSELELIIHRVKVSTTPDGRVIDLFF 179

Query: 181 ITDGMELLHTKERQEETCSMLIATLGPSISCEILLAEGFQQGFSSLPPTISEELFRLELA 240
           ITDGMELLHTKERQEETCSMLIATLGPSISCEILLAEGFQQGFSSLPPTISEELFRLELA
Sbjct: 180 ITDGMELLHTKERQEETCSMLIATLGPSISCEILLAEGFQQGFSSLPPTISEELFRLELA 239

Query: 241 DGDNCSRSICAEMKRVQKATINFDNTLSPAHTLLQINCADQKGLLYDILRTMKDCSIQVT 300
           DGDNCSRSICAEMKRVQKATINFDNTLSPAHTLLQINCADQKGLLYDILRTMKDCSIQVT
Sbjct: 240 DGDNCSRSICAEMKRVQKATINFDNTLSPAHTLLQINCADQKGLLYDILRTMKDCSIQVT 299

Query: 301 YGRFWSDKKGFREVDLFIKQADGKKIIDPEKQDVLSSR 338
           YGRFWSDKKGFREVDLFIKQADGKKIIDPEKQDVLSSR
Sbjct: 300 YGRFWSDKKGFREVDLFIKQADGKKIIDPEKQDVLSSR 337



>Os09g0570900 Amino acid-binding ACT domain containing protein
          Length = 427

 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/410 (50%), Positives = 265/410 (64%), Gaps = 35/410 (8%)

Query: 43  GQDSVITINCPDQAGLGCDLCRTILEFGLRITRGADVSTDGQWCFVVFWVVPRTP-SIKV 101
           G+ +V+TI+CPD+ GLGCDLCR +L FGL I +G D+STDG+WC++V WVV R   ++ +
Sbjct: 20  GEPTVVTISCPDKTGLGCDLCRLVLLFGLNIVKG-DMSTDGRWCYIVLWVVARPGRAMAM 78

Query: 102 RWANLKNRLMSMCPSNYPMTF-----------YPEITQPGPS-QFYLLKLFSADRKGLLH 149
           RW  LK+RL+ +CP   P                +   P PS   +LLK F  DR GLLH
Sbjct: 79  RWDLLKDRLIQLCPVAAPFGLDNHHLAAAGLHLHDHDAPAPSPNIFLLKFFCYDRMGLLH 138

Query: 150 DVTHILSELELIIHRVKVSTTPDGRVIDLFFITDGMELLHTKERQEETCSMLIATLGPSI 209
           DVT +L ELEL I RVKVSTTPDGRV+DLFFITD  ELLHTK R+EET   L + LG S+
Sbjct: 139 DVTRVLCELELTIRRVKVSTTPDGRVLDLFFITDARELLHTKSRREETYDKLQSVLGDSL 198

Query: 210 -SCEILLA----EGFQQGFSSLPPTISEELFRLELADGDNCSRSICAEMKRVQKATINFD 264
            SCEI  A        Q  + LP +  EE+F +E+ +    SRS C  +      ++  D
Sbjct: 199 TSCEIESATEEMSSCLQASTLLPHSAVEEMFNVEVVEEQ--SRS-CGGL------SVAMD 249

Query: 265 NTLSPAHTLLQINCADQKGLLYDILRTMKDCSIQVTYGRFWSDKKGFREVDLFIKQADGK 324
           N+LSPAHTL+QI C D KGL+YDI+RT+KDC+IQ++YGRF++ + G  EVDLF  Q+DGK
Sbjct: 250 NSLSPAHTLIQIQCGDHKGLVYDIMRTLKDCNIQISYGRFYASQNGSCEVDLFAVQSDGK 309

Query: 325 KIIDPEKQDVLSSRLRSEMLHPLRVMIVNRGPDVELLVANPVELSGKGRPRVFYDATFAL 384
           KI+D  KQ  L  RLR+E+  PLRV +VNRGPD ELLVANPVE+SGKGRP VFYD T AL
Sbjct: 310 KIVDQHKQRALCCRLRTELHRPLRVALVNRGPDTELLVANPVEVSGKGRPLVFYDITLAL 369

Query: 385 KALGICIFSVRITEYSERVQNEFVFTLLLMHFRLKLGGRQHQSVNGRSTD 434
           K L   IF   + E    V  +  + +    +R+ LG   H S+  +  D
Sbjct: 370 KKLHKRIF---LAEIGRHVVGDREWEV----YRVHLGEGDHSSLRSKIVD 412



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,016,153
Number of extensions: 601535
Number of successful extensions: 1174
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1161
Number of HSP's successfully gapped: 3
Length of query: 458
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 354
Effective length of database: 11,605,545
Effective search space: 4108362930
Effective search space used: 4108362930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)