BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0569100 Os09g0569100|AK071860
(383 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0569100 Haloacid dehalogenase-like hydrolase domain co... 733 0.0
Os04g0557000 Similar to Genetic modifier 241 5e-64
Os05g0168300 Haloacid dehalogenase-like hydrolase domain co... 127 2e-29
>Os09g0569100 Haloacid dehalogenase-like hydrolase domain containing protein
Length = 383
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/383 (93%), Positives = 359/383 (93%)
Query: 1 MMVVDTVSASTSLVAHHLFDQRSKANHHLRRTLHVVSCRPLPTHFAGRRLVARAPRQHQP 60
MMVVDTVSASTSLVAHHLFDQRSKANHHLRRTLHVVSCRPLPTHFAGRRLVARAPRQHQP
Sbjct: 1 MMVVDTVSASTSLVAHHLFDQRSKANHHLRRTLHVVSCRPLPTHFAGRRLVARAPRQHQP 60
Query: 61 RLADWTVKALAMGVTKEASPHREYRGIPGEGADMGDIGITNPKTTWPPRNRADDPKLHNP 120
RLADWTVKALAMGVTKEASPHREYRGIPGEGADMGDIGITNPKTTWPPRNRADDPKLHNP
Sbjct: 61 RLADWTVKALAMGVTKEASPHREYRGIPGEGADMGDIGITNPKTTWPPRNRADDPKLHNP 120
Query: 121 LLRLERMGCGWLGVIFEWEGVIVEDDAELERQAWFTLAQEEGKSPPLAFVLKRIEGMKSE 180
LLRLERMGCGWLGVIFEWEGVIVEDDAELERQAWFTLAQEEGKSPPLAFVLKRIEGMKSE
Sbjct: 121 LLRLERMGCGWLGVIFEWEGVIVEDDAELERQAWFTLAQEEGKSPPLAFVLKRIEGMKSE 180
Query: 181 QAISEVLCWSRDPSELRRLSSRKEEIRCNLRGTAFYQMRNGSREFMSTLANYKIPLAVAT 240
QAISEVLCWSRDPSELRRLSSRKEEIRCNLRGTAFYQMRNGSREFMSTLANYKIPLAVAT
Sbjct: 181 QAISEVLCWSRDPSELRRLSSRKEEIRCNLRGTAFYQMRNGSREFMSTLANYKIPLAVAT 240
Query: 241 TRPRKVIEEAIDAVGVRSFFDAVVAAEDVYRGKPDPEMFLYAAQLLSFIPERCIVFGNSN 300
TRPRKVIEEAIDAVGVRSFFDAVVAAEDVYRGKPDPEMFLYAAQLLSFIPERCIVFGNSN
Sbjct: 241 TRPRKVIEEAIDAVGVRSFFDAVVAAEDVYRGKPDPEMFLYAAQLLSFIPERCIVFGNSN 300
Query: 301 SAVEAAHDARMKCVAVASKHPIYELNAADLVVKQLDELSVVDLKNLADIXXXXXXXXXXX 360
SAVEAAHDARMKCVAVASKHPIYELNAADLVVKQLDELSVVDLKNLADI
Sbjct: 301 SAVEAAHDARMKCVAVASKHPIYELNAADLVVKQLDELSVVDLKNLADIESPEFGMEPEP 360
Query: 361 XXXXXXXXXXXXXTSVGVDDLFW 383
TSVGVDDLFW
Sbjct: 361 EMEEEEDEDSSPSTSVGVDDLFW 383
>Os04g0557000 Similar to Genetic modifier
Length = 350
Score = 241 bits (616), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 124/235 (52%), Positives = 165/235 (70%), Gaps = 2/235 (0%)
Query: 115 PKLHNPLLRLERMGCGWLGVIFEWEGVIVEDD-AELERQAWFTLAQEEGKSPPLAFVLKR 173
P L + E + GVI EWEGV+VEDD +LE + W+ L+ EE KS P VLK
Sbjct: 94 PPSKKKLKKEEMVSSNQFGVILEWEGVVVEDDDPDLEPRVWYVLSLEEAKSFPPDAVLKE 153
Query: 174 IEGMKSEQAISEVLCWSRDPSELRRLSSRKEEIRCNLRGTAFYQMRNGSREFMSTLANYK 233
IEGM+++QAI EVL WS DP E++RL++RKE I LRG FYQ+R G +F++TL ++
Sbjct: 154 IEGMRTDQAILEVLHWSEDPQEVQRLAARKEVIYKTLRGR-FYQLRPGVLDFLNTLVDFD 212
Query: 234 IPLAVATTRPRKVIEEAIDAVGVRSFFDAVVAAEDVYRGKPDPEMFLYAAQLLSFIPERC 293
IP+A+ T RPR +EE I AVG++ +FDA+VAAED RGKP+ EMF A L P+ C
Sbjct: 213 IPIAITTPRPRLSLEEGIKAVGLQGYFDAIVAAEDFCRGKPEGEMFEVTAGQLGLEPDVC 272
Query: 294 IVFGNSNSAVEAAHDARMKCVAVASKHPIYELNAADLVVKQLDELSVVDLKNLAD 348
+V GNSNS +E+AH A M+CVAVAS++P YEL AA+ VV+ LD+LSV DL+ +A+
Sbjct: 273 LVLGNSNSTIESAHTAGMRCVAVASRYPAYELQAANHVVRWLDQLSVADLQRIAN 327
>Os05g0168300 Haloacid dehalogenase-like hydrolase domain containing protein
Length = 355
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 146/291 (50%), Gaps = 24/291 (8%)
Query: 72 MGVTKEASPHREYRGIPGE-------GADMGDIGITNPKTTWPPRNRAD--DPKLHNPLL 122
+GV + AS + +PG+ GA+ G+ G + P + D + KL L
Sbjct: 42 VGVRRRASGFEAFPPLPGKVFVEEAIGAEYGE-GFETFRMDGPLKVDVDYLNEKLQECFL 100
Query: 123 RLERMGCG---WLGVIFEWEGVIVEDDAELERQAWFTLAQEEGKSPPLA-FVLKRIEGMK 178
+ R G+IF W+ VI + D+ L+ AW LA EEGK P A V K I
Sbjct: 101 QRIRHAMKPDEACGLIFSWDNVIADTDS-LKLDAWRQLALEEGKDIPNAGHVQKSILHGA 159
Query: 179 SEQAISEVLCWSRDPSELRRLSSRKEEIRCNLRGTAFYQMR---NGSREFMSTLANYKIP 235
++ + +VLCW++D S++ RL +R E L +++ NG RE++ + IP
Sbjct: 160 ADHVLRKVLCWAKDESQMERLKARLIE----LYYENLFKLDTPVNGLREWLDAVQTAGIP 215
Query: 236 LAVATTRPRKVIEEAIDAVGVRSFFDAVVAAEDVYRGKPDPEMFLYAAQLLSFIPERCIV 295
AVA++ R+ + EA+D + + +F A+V ED FL AA L P +C+V
Sbjct: 216 CAVASSLDRRCMIEALDRMELSKYFKAIVTDEDDMESIA--HRFLSAAMKLDRKPSKCVV 273
Query: 296 FGNSNSAVEAAHDARMKCVAVASKHPIYELNAADLVVKQLDELSVVDLKNL 346
F + V AAH+ M VA+ HP YEL ADL + + ELSV++L+ L
Sbjct: 274 FEDDPRGVTAAHNCTMMAVALIGAHPAYELVQADLAIAKYSELSVINLRRL 324
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,412,052
Number of extensions: 525147
Number of successful extensions: 1154
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1150
Number of HSP's successfully gapped: 3
Length of query: 383
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 280
Effective length of database: 11,657,759
Effective search space: 3264172520
Effective search space used: 3264172520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)