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Os09g0569100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haloacid dehalogenase-like hydrolase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.3 (0.0194) R2 : 0.517
β1 : 0.757 (0.071) R2dD : 0.125 R2D : 0.112
β2 : 0.962 (0.0505) R2dC : 0.386 R2C : 0.393
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.122 (0.0414) R2dN8 : 0.0124 R2N8 : -0.00157
σ : 0.365
deviance : 60.63
__
_____
C
peak time of C : 5.34
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.81 0.345 14.3 0.712 0.168 -1.03 -1.9 -2.46 0.139 3.8 1.68 722 -- --
56.14 0.349 14.3 0.731 0.242 -1.08 -0.832 -- 0.112 1.88 2.06 761 -- --
57 0.352 14.3 0.777 0.335 -0.987 -- -0.766 0.155 3 2.072 803 -- --
57.57 0.353 14.3 0.811 0.321 -1.01 -- -- 0.16 2.91 2.01 797 -- --
58.56 0.356 14.3 0.859 -- -1.09 -- -0.241 0.202 -- 2.02 693 -- --
60.62 0.365 14.3 0.757 0.962 -- 0.0781 -- 0.123 5.36 -- -- -- --
60.63 0.365 14.3 0.757 0.962 -- -- -- 0.122 5.34 -- -- -- --
58.28 0.356 14.3 0.82 -- -1.18 -- -- 0.193 -- 2.01 695 -- --
74.73 0.405 14.3 -- 1.02 0.194 -- -- 0.0278 4.45 2.146 784 -- --
108.88 0.488 14.3 0.79 -- -- -- -- 0.146 -- -- -- -- --
75.72 0.407 14.3 -- 0.975 -- -- -- 0.038 5.31 -- -- -- --
76.16 0.406 14.3 -- -- -1.23 -- -- 0.157 -- 2.14 679 -- --
125.32 0.523 14.3 -- -- -- -- -- 0.0585 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.68 temperature 30.0 90 < th dose independent sin 7 NA
3 52.89 radiation 10.0 720 < th dose dependent rect. 5 2
4 52.91 temperature 30.0 90 < th dose independent rect. 23 16
5 52.98 radiation 40.0 720 < th dose dependent rect. 23 8
6 53.06 atmosphere 1000.0 90 > th dose independent rect. 5 12
7 53.17 atmosphere 995.0 720 > th dose dependent rect. 4 10
11 53.34 radiation 10.0 720 < th dose dependent rect. 19 12
13 53.35 atmosphere 995.0 270 > th dose dependent sin 23 NA
18 53.38 atmosphere 1000.0 270 > th dose dependent rect. 9 7
20 53.41 radiation 1.0 720 < th dose independent rect. 4 13
21 53.42 temperature 25.0 270 < th dose independent sin 15 NA
22 53.42 radiation 1.0 720 < th dose independent rect. 3 15
23 53.43 temperature 30.0 90 < th dose independent rect. 5 11
24 53.44 temperature 25.0 720 < th dose independent rect. 6 4
25 53.44 radiation 1.0 720 > th dose independent rect. 15 23
33 53.52 radiation 20.0 270 < th dose independent sin 11 NA
35 53.53 atmosphere 995.0 90 > th dose dependent rect. 5 12
37 53.57 radiation 10.0 720 < th dose dependent rect. 3 4
42 53.60 temperature 25.0 720 < th dose independent rect. 5 8
45 53.62 temperature 25.0 270 < th dose independent rect. 16 13
59 53.66 temperature 30.0 720 < th dose dependent rect. 5 9
61 53.67 temperature 25.0 14400 < th dose independent rect. 6 1
63 53.68 temperature 25.0 14400 > th dose independent rect. 6 1
64 53.68 radiation 1.0 720 < th dose independent rect. 3 23
65 53.68 atmosphere 995.0 720 > th dose dependent rect. 5 2
68 53.70 radiation 10.0 720 < th dose independent rect. 19 12
75 53.73 atmosphere 1000.0 90 > th dose independent rect. 10 7
107 53.83 radiation 1.0 720 > th dose independent rect. 17 19
110 53.84 atmosphere 1000.0 90 > th dose independent sin 22 NA
116 53.87 wind 9.0 720 < th dose independent rect. 11 8
125 53.89 radiation 1.0 720 > th dose independent rect. 13 23
126 53.89 humidity 90.0 14400 > th dose dependent rect. 1 1
127 53.89 wind 1.0 43200 < th dose dependent rect. 1 4
146 53.92 radiation 40.0 270 < th dose dependent rect. 21 15
156 53.95 atmosphere 1000.0 10 > th dose independent sin 21 NA
180 53.98 radiation 20.0 270 < th dose independent rect. 21 14
185 53.99 radiation 10.0 720 < th dose independent rect. 5 2
186 53.99 radiation 10.0 720 < th dose independent rect. 3 4
189 53.99 wind 9.0 720 < th dose independent rect. 7 16
201 54.01 radiation 40.0 90 < th dose independent rect. 23 16
207 54.01 precipitation 0.1 43200 > th dose dependent rect. 2 17
210 54.02 radiation 30.0 270 < th dose independent rect. 21 16
212 54.02 atmosphere 995.0 720 > th dose dependent sin 3 NA
233 54.05 temperature 25.0 720 < th dose independent rect. 17 5
243 54.06 wind 9.0 720 < th dose independent rect. 7 12
246 54.06 temperature 25.0 14400 > th dose dependent rect. 4 5
265 54.07 radiation 1.0 720 < th dose dependent rect. 4 14
269 54.08 radiation 1.0 720 < th dose independent rect. 1 23
271 54.08 temperature 25.0 14400 > th dose dependent rect. 7 2
276 54.08 radiation 1.0 720 < th dose dependent rect. 5 12
279 54.09 radiation 20.0 720 < th dose independent rect. 23 8
280 54.09 radiation 1.0 720 < th dose independent rect. 19 23
295 54.11 radiation 40.0 10 < th dose independent sin 9 NA
309 54.12 radiation 40.0 720 < th dose dependent rect. 3 9
321 54.15 temperature 25.0 720 < th dose independent sin 3 NA
352 54.17 radiation 1.0 720 < th dose dependent rect. 3 23
354 54.18 temperature 25.0 720 < th dose independent rect. 18 1
365 54.19 radiation 1.0 720 > th dose independent sin 2 NA
366 54.19 radiation 40.0 90 < th dose independent sin 7 NA
377 54.19 radiation 40.0 720 < th dose dependent rect. 19 20
381 54.20 temperature 30.0 720 < th dose dependent sin 3 NA
390 54.21 radiation 10.0 14400 > th dose independent rect. 17 1
410 54.22 precipitation 0.1 43200 > th dose independent rect. 15 5
411 54.22 atmosphere 1000.0 720 > th dose independent rect. 6 8
420 54.22 radiation 40.0 720 < th dose dependent rect. 19 17
426 54.23 precipitation 0.1 43200 < th dose independent rect. 15 5
430 54.23 precipitation 0.1 43200 < th dose dependent rect. 15 5
441 54.24 temperature 25.0 720 < th dose independent rect. 17 3
456 54.25 humidity 80.0 14400 < th dose independent rect. 18 8
458 54.25 precipitation 0.1 43200 > th dose independent rect. 3 15
459 54.25 humidity 80.0 14400 > th dose independent rect. 17 16
463 54.25 precipitation 0.1 43200 > th dose dependent rect. 9 11
468 54.26 precipitation 0.1 43200 > th dose independent rect. 13 5
472 54.26 radiation 40.0 720 < th dose independent rect. 3 8
473 54.26 precipitation 0.1 43200 < th dose independent rect. 3 15
475 54.26 radiation 1.0 720 > th dose independent rect. 7 23
484 54.26 precipitation 0.1 43200 < th dose dependent rect. 3 15
497 54.27 precipitation 0.1 43200 > th dose dependent sin 1 NA
504 54.27 temperature 10.0 720 > th dose dependent rect. 7 12
515 54.28 radiation 30.0 720 < th dose independent rect. 19 16
516 54.28 radiation 30.0 720 < th dose independent rect. 19 18
547 54.30 precipitation 0.1 43200 < th dose independent rect. 13 5
559 54.30 precipitation 0.1 43200 < th dose dependent rect. 13 5
569 54.31 radiation 1.0 720 > th dose independent no NA NA
578 54.31 humidity 80.0 14400 > th dose independent rect. 17 11
582 54.31 radiation 1.0 720 > th dose independent rect. 5 14
614 54.31 radiation 40.0 720 < th dose independent rect. 19 20
659 54.32 humidity 80.0 14400 > th dose independent rect. 18 7
669 54.32 atmosphere 1015.0 720 < th dose dependent rect. 7 12
671 54.32 precipitation 0.1 43200 > th dose dependent rect. 15 15
673 54.32 radiation 10.0 720 < th dose dependent rect. 19 22
710 54.34 humidity 80.0 14400 < th dose independent rect. 17 17
777 54.36 radiation 1.0 720 > th dose independent rect. 15 15
797 54.37 humidity 70.0 720 > th dose independent rect. 23 8
824 54.38 humidity 80.0 14400 < th dose independent rect. 16 14
841 54.39 humidity 80.0 14400 > th dose independent rect. 19 2
872 54.40 humidity 50.0 720 > th dose independent rect. 22 14
893 54.41 radiation 1.0 720 < th dose independent sin 2 NA
959 54.43 precipitation 0.1 43200 > th dose independent rect. 16 1
960 54.43 temperature 10.0 720 > th dose independent rect. 23 8
961 54.43 temperature 30.0 720 < th dose independent rect. 23 8
962 54.43 humidity 50.0 720 > th dose independent rect. 23 8
964 54.43 atmosphere 995.0 720 > th dose independent rect. 23 8
969 54.43 temperature 10.0 720 > th dose independent rect. 7 16
974 54.43 precipitation 0.1 43200 > th dose dependent rect. 16 1
995 54.44 humidity 80.0 14400 > th dose independent sin 13 NA
997 54.44 temperature 25.0 270 < th dose independent rect. 9 1
1000 54.44 wind 9.0 720 < th dose independent rect. 23 8