BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0569100 Os09g0569100|AK071860
(383 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G11570.1 | chr4:7004743-7005864 FORWARD LENGTH=374 390 e-109
AT3G10970.1 | chr3:3433276-3436077 REVERSE LENGTH=366 102 4e-22
AT1G56500.1 | chr1:21159775-21167092 FORWARD LENGTH=1056 62 6e-10
AT4G21470.1 | chr4:11431284-11433197 FORWARD LENGTH=380 56 3e-08
>AT4G11570.1 | chr4:7004743-7005864 FORWARD LENGTH=374
Length = 373
Score = 390 bits (1001), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/343 (55%), Positives = 253/343 (73%), Gaps = 8/343 (2%)
Query: 9 ASTSLVAHHLFDQRSKANHHLRRTLHVVSCR-PLPTHFAGRRLVARAPRQ--HQPRLADW 65
+ SLV H R + L+ R P+ ++ + +++ Q + R++ +
Sbjct: 6 GAVSLVGHRPSIVRITVKNELKTQKSQSIVRFPVKVDYSAKGVLSHLMTQSVKKNRMSVF 65
Query: 66 TVKALAMGVTKEASPHREYRGIPGEGADMGDIGITNPKTTWPPRNRADDPKLHNPLLRLE 125
++ALAM +TKE ++ +P + + D G + + WPP N+AD P LHNPLLR E
Sbjct: 66 PIRALAMELTKE---KKKDDRLP-KTWNYLDSGADDKPSLWPPENKADKPSLHNPLLRQE 121
Query: 126 RMGCGWLGVIFEWEGVIVEDDAELERQAWFTLAQEEGKSPPLAFVLKRIEGMKSEQAISE 185
RMGCGWLG IFEWEGV++ED+ +L+ Q+W TLAQEEGKSPP AF+L+R+EGMK+EQAISE
Sbjct: 122 RMGCGWLGAIFEWEGVLIEDNPDLDNQSWLTLAQEEGKSPPPAFMLRRVEGMKNEQAISE 181
Query: 186 VLCWSRDPSELRRLSSRKEEIRCNLRGTAFYQMRNGSREFMSTLANYKIPLAVATTRPRK 245
VLCWSRDP ++RR++ RKEEI L G Y++R+GS+EF++ L N KIP+A+ +TRPR+
Sbjct: 182 VLCWSRDPVQVRRMAKRKEEIFKALHG-GVYRLRDGSQEFVNVLMNNKIPMALVSTRPRE 240
Query: 246 VIEEAIDAVGVRSFFDAVVAAEDVYRGKPDPEMFLYAAQLLSFIPERCIVFGNSNSAVEA 305
+E A+ ++G+R FF +VA+EDVYRGKPDPEMF+YAAQLL FIPERCIVFGNSN +EA
Sbjct: 241 TLENAVGSIGIRKFFSVIVASEDVYRGKPDPEMFIYAAQLLDFIPERCIVFGNSNQTIEA 300
Query: 306 AHDARMKCVAVASKHPIYELNAADLVVKQLDELSVVDLKNLAD 348
AHD RMKCVAVASKHPIYEL AA+LVV++LDELS++DLK LAD
Sbjct: 301 AHDGRMKCVAVASKHPIYELGAAELVVRRLDELSIIDLKKLAD 343
>AT3G10970.1 | chr3:3433276-3436077 REVERSE LENGTH=366
Length = 365
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 113/217 (52%), Gaps = 9/217 (4%)
Query: 133 GVIFEWEGVIVEDDAELERQAWFTLAQEEGKSPPLAFVLKRIEGMK-SEQAISEVLCWSR 191
G+IF W+ V V D L+ +AW LA EEGK ++R+ ++ + +VL W +
Sbjct: 124 GLIFSWDNV-VADTRSLKLEAWKQLAAEEGKEITEEVDIQRLMLYAGADHVLRKVLFWEK 182
Query: 192 DPSELRRLSSRKEEIRCN--LRGTAFYQMRNGSREFMSTLANYKIPLAVATTRPRKVIEE 249
S++ RL R EI + L+ T + + G R+++ + +IP AV + RK +
Sbjct: 183 TQSKIDRLKLRLSEIYYDSLLKLT---EPKEGLRDWLDAVTTARIPCAVVSNLDRKNMIN 239
Query: 250 AIDAVGVRSFFDAVVAAEDVYRGKPDPEMFLYAAQLLSFIPERCIVFGNSNSAVEAAHDA 309
A++ +G++ +F AVV+ ED FL AA L P +C+VF + + AAH+
Sbjct: 240 ALERMGLQKYFQAVVSEEDGMESIA--HRFLSAAVKLDRKPSKCVVFEDDPRGITAAHNC 297
Query: 310 RMKCVAVASKHPIYELNAADLVVKQLDELSVVDLKNL 346
M V + H Y+L ADL V ELSV++L+ L
Sbjct: 298 TMMAVGLIGAHRAYDLVQADLAVGNFYELSVINLRRL 334
>AT1G56500.1 | chr1:21159775-21167092 FORWARD LENGTH=1056
Length = 1055
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 221 GSREFMSTLANYKIPLAVATTRPRKVIEEAIDAVGVR-SFFDAVVAAEDVYRGKPDPEMF 279
G+ E ++ N + +AVA++ R ++ + A G+ + FDA+V+A+ KP P++F
Sbjct: 164 GALELVTECKNKGLKVAVASSADRIKVDANLKAAGLSLTMFDAIVSADAFENLKPAPDIF 223
Query: 280 LYAAQLLSFIPERCIVFGNSNSAVEAAHDARMKCVAVAS 318
L AA++L C+V ++ + V+AA A M+C+AV +
Sbjct: 224 LAAAKILGVPTSECVVIEDALAGVQAAQAANMRCIAVKT 262
>AT4G21470.1 | chr4:11431284-11433197 FORWARD LENGTH=380
Length = 379
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 221 GSREFMSTLANYKIPLAVATTRPRKVIEEAIDA-VGVRSFFDAVVAAEDVYRGKPDPEMF 279
G+ + L + +P+A+A+ R IE I G + F +V +++V +GKP P++F
Sbjct: 97 GANRLIRHLKCHGVPVALASNSSRANIESKISYHEGWKECFSVIVGSDEVSKGKPSPDIF 156
Query: 280 LYAAQLLSFIPERCIVFGNSNSAVEAAHDARMKCVAVAS-KHPIYELNAADLVVKQL 335
L AA+ L P C+V +S V A A K +AV S + +AD V+ L
Sbjct: 157 LEAAKRLKKDPADCLVIEDSVPGVMAGKAAGTKVIAVPSLPKQTHLYTSADEVINSL 213
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,623,289
Number of extensions: 307331
Number of successful extensions: 658
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 654
Number of HSP's successfully gapped: 4
Length of query: 383
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 283
Effective length of database: 8,364,969
Effective search space: 2367286227
Effective search space used: 2367286227
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)