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Os04g0557000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Genetic modifier.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.6 (0.0173) R2 : 0.434
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.584 (0.0429) R2dC : 0.232 R2C : 0.174
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.463 (0.0364) R2dN8 : 0.259 R2N8 : 0.202
σ : 0.326
deviance : 48.68
__
_____
C
peak time of C : 21.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.29 0.279 13.6 -0.645 0.972 1.73 -0.232 -0.408 -0.584 4.44 1.18 779 -- --
35.39 0.277 13.6 -0.635 0.976 1.75 -0.00478 -- -0.585 4.48 1.19 781 -- --
35.34 0.277 13.6 -0.635 0.972 1.73 -- -0.14 -0.583 4.45 1.18 779 -- --
35.37 0.277 13.6 -0.632 0.999 1.77 -- -- -0.581 4.49 1.183 779 -- --
35.92 0.279 13.6 -0.695 -- 1.1 -- -0.0427 -0.653 -- 0.8198 1179 -- --
41.42 0.302 13.6 -0.527 0.583 -- -0.162 -- -0.521 21.3 -- -- -- --
41.52 0.302 13.6 -0.521 0.584 -- -- -- -0.521 21.3 -- -- -- --
35.92 0.279 13.6 -0.679 -- 1.12 -- -- -0.651 -- 0.77 1182 -- --
45.76 0.315 13.6 -- 0.967 1.73 -- -- -0.511 4.51 1.436 776 -- --
61.38 0.366 13.6 -0.519 -- -- -- -- -0.524 -- -- -- -- --
48.68 0.326 13.6 -- 0.584 -- -- -- -0.463 21.2 -- -- -- --
46.39 0.317 13.6 -- -- 0.934 -- -- -0.544 -- 1.44 1142 -- --
68.48 0.386 13.6 -- -- -- -- -- -0.466 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.18 temperature 10.0 90 > th dose dependent rect. 7 21
3 32.41 temperature 10.0 10 > th dose dependent rect. 8 19
11 32.98 temperature 10.0 30 > th dose dependent rect. 8 17
24 33.38 temperature 15.0 90 > th dose dependent rect. 23 13
38 33.61 temperature 10.0 270 > th dose dependent rect. 20 14
55 33.86 radiation 1.0 270 < th dose dependent rect. 3 11
62 33.94 radiation 1.0 270 < th dose independent rect. 3 11
75 34.06 radiation 1.0 270 < th dose dependent rect. 3 15
83 34.13 atmosphere 1000.0 10 > th dose independent rect. 12 20
91 34.22 humidity 50.0 10 > th dose dependent rect. 12 20
95 34.27 radiation 10.0 90 < th dose dependent rect. 5 3
102 34.39 radiation 1.0 270 < th dose independent sin 2 NA
103 34.41 radiation 1.0 270 > th dose independent sin 3 NA
104 34.43 temperature 15.0 10 > th dose dependent rect. 8 4
107 34.44 wind 1.0 270 > th dose independent rect. 3 2
108 34.45 radiation 1.0 270 < th dose dependent rect. 3 3
118 34.52 radiation 1.0 270 < th dose dependent sin 2 NA
120 34.54 temperature 10.0 270 > th dose dependent rect. 7 2
131 34.58 humidity 90.0 90 < th dose independent rect. 7 5
139 34.61 precipitation 0.1 270 < th dose independent rect. 5 22
142 34.61 precipitation 0.1 270 < th dose dependent rect. 5 22
165 34.74 radiation 1.0 720 > th dose independent rect. 15 20
171 34.76 temperature 30.0 270 < th dose dependent rect. 3 2
174 34.77 radiation 1.0 720 > th dose independent rect. 13 22
184 34.82 atmosphere 1015.0 270 < th dose dependent rect. 7 3
188 34.83 atmosphere 995.0 10 > th dose dependent rect. 12 20
189 34.84 temperature 30.0 90 < th dose dependent rect. 3 5
193 34.86 radiation 1.0 270 > th dose independent rect. 7 2
197 34.87 radiation 1.0 720 < th dose independent rect. 3 19
208 34.91 atmosphere 1015.0 10 < th dose dependent rect. 8 4
209 34.92 atmosphere 1000.0 270 > th dose independent rect. 3 2
218 34.95 radiation 1.0 720 < th dose dependent rect. 3 19
219 34.95 temperature 30.0 30 < th dose dependent rect. 12 20
228 34.97 radiation 1.0 270 > th dose independent rect. 16 22
229 34.97 radiation 1.0 720 < th dose independent rect. 1 22
231 34.97 temperature 30.0 90 < th dose dependent rect. 3 16
235 34.98 precipitation 0.1 90 < th dose independent rect. 7 21
240 34.98 precipitation 0.1 90 < th dose dependent rect. 7 21
253 35.04 wind 9.0 270 < th dose independent rect. 5 22
270 35.08 temperature 30.0 270 < th dose dependent rect. 1 5
275 35.09 atmosphere 1015.0 10 < th dose dependent rect. 8 6
285 35.12 humidity 90.0 90 < th dose independent rect. 7 20
286 35.12 atmosphere 995.0 270 > th dose dependent rect. 3 2
289 35.12 temperature 20.0 30 > th dose dependent rect. 20 16
305 35.15 atmosphere 1015.0 90 < th dose dependent rect. 7 6
306 35.15 radiation 1.0 720 < th dose dependent rect. 1 22
312 35.16 temperature 30.0 90 < th dose dependent rect. 5 2
321 35.17 wind 9.0 270 < th dose independent rect. 3 2
322 35.17 temperature 10.0 270 > th dose independent rect. 3 2
324 35.17 temperature 30.0 270 < th dose independent rect. 3 2
325 35.17 humidity 50.0 270 > th dose independent rect. 3 2
329 35.17 atmosphere 1010.0 270 < th dose independent rect. 3 2
335 35.17 temperature 10.0 270 > th dose independent rect. 5 22
339 35.18 radiation 20.0 10 < th dose independent rect. 5 3
347 35.19 humidity 90.0 270 < th dose independent rect. 7 3
354 35.20 atmosphere 1000.0 90 > th dose independent rect. 5 2
367 35.22 humidity 60.0 10 > th dose independent rect. 12 20
383 35.24 wind 9.0 1440 < th dose independent rect. 4 5
384 35.24 temperature 10.0 1440 > th dose independent rect. 4 5
387 35.24 humidity 50.0 1440 > th dose independent rect. 4 5
389 35.24 atmosphere 995.0 1440 > th dose independent rect. 4 5
390 35.24 atmosphere 1015.0 1440 < th dose independent rect. 4 5
391 35.24 temperature 10.0 1440 > th dose independent rect. 9 19
416 35.28 wind 9.0 90 < th dose independent rect. 7 21
435 35.30 atmosphere 1010.0 90 < th dose independent rect. 5 2
436 35.30 temperature 20.0 10 > th dose independent rect. 8 4
438 35.30 temperature 15.0 90 > th dose independent rect. 7 21
451 35.32 humidity 80.0 90 > th dose dependent rect. 5 3
456 35.34 wind 9.0 10 < th dose independent rect. 8 4
457 35.34 radiation 1.0 720 < th dose independent rect. 14 18
461 35.34 temperature 30.0 90 < th dose dependent rect. 1 22
462 35.35 temperature 20.0 270 > th dose independent rect. 7 3
464 35.35 atmosphere 1000.0 270 > th dose independent rect. 10 21
467 35.35 temperature 30.0 90 < th dose dependent rect. 3 20
481 35.38 wind 1.0 10 > th dose independent rect. 8 4
491 35.39 radiation 20.0 10 < th dose independent rect. 3 5
500 35.40 humidity 60.0 90 > th dose dependent rect. 4 4
505 35.40 radiation 40.0 90 < th dose dependent rect. 13 19
518 35.41 radiation 1.0 90 > th dose independent rect. 7 5
521 35.41 humidity 50.0 90 > th dose dependent rect. 5 2
529 35.42 radiation 1.0 10 > th dose independent rect. 8 4
537 35.42 radiation 1.0 720 < th dose dependent rect. 14 18
550 35.45 precipitation 0.1 90 < th dose independent rect. 4 3
553 35.45 precipitation 0.1 90 < th dose dependent rect. 4 3
582 35.47 radiation 40.0 10 < th dose dependent rect. 12 20
604 35.49 humidity 50.0 30 > th dose dependent rect. 17 15
608 35.50 radiation 40.0 270 < th dose independent rect. 7 2
629 35.51 temperature 10.0 10 > th dose independent rect. 8 4
632 35.51 atmosphere 995.0 10 > th dose independent rect. 8 4
633 35.51 atmosphere 1015.0 10 < th dose independent rect. 8 4
634 35.51 precipitation 0.1 10 < th dose independent rect. 8 4
638 35.51 temperature 10.0 10 > th dose independent rect. 12 20
646 35.51 precipitation 0.1 10 < th dose dependent rect. 8 4
663 35.53 temperature 30.0 90 < th dose dependent rect. 1 7
676 35.54 humidity 50.0 270 > th dose dependent rect. 3 2
686 35.55 temperature 25.0 90 > th dose independent rect. 23 13
687 35.55 humidity 90.0 90 < th dose independent rect. 23 13
699 35.56 humidity 50.0 10 > th dose independent rect. 8 4
716 35.57 temperature 15.0 90 > th dose independent rect. 8 19
723 35.58 humidity 70.0 10 > th dose independent rect. 3 5
724 35.58 wind 1.0 10 > th dose independent rect. 8 6
729 35.58 temperature 20.0 90 > th dose dependent sin 6 NA
743 35.59 radiation 40.0 10 < th dose independent rect. 12 20
752 35.60 precipitation 0.1 270 < th dose independent rect. 7 2
756 35.60 wind 9.0 10 < th dose independent rect. 12 20
759 35.60 precipitation 0.1 270 < th dose dependent rect. 7 2
766 35.61 humidity 60.0 270 > th dose independent rect. 7 2
767 35.61 wind 9.0 270 < th dose independent rect. 2 4
768 35.61 temperature 10.0 270 > th dose independent rect. 2 4
770 35.61 temperature 30.0 270 < th dose independent rect. 2 4
771 35.61 humidity 50.0 270 > th dose independent rect. 2 4
775 35.61 atmosphere 1015.0 270 < th dose independent rect. 2 4
863 35.66 wind 9.0 270 < th dose independent rect. 7 2
867 35.66 atmosphere 995.0 270 > th dose independent rect. 7 2
868 35.66 atmosphere 1015.0 270 < th dose independent rect. 7 2
879 35.66 temperature 10.0 270 > th dose independent rect. 9 22
902 35.68 humidity 90.0 90 < th dose independent rect. 7 10
937 35.70 wind 9.0 270 < th dose dependent rect. 7 2
949 35.71 wind 9.0 10 < th dose independent rect. 8 19
961 35.72 temperature 10.0 1440 > th dose independent rect. 9 4
964 35.72 atmosphere 995.0 1440 > th dose independent rect. 9 4
969 35.72 temperature 10.0 1440 > th dose independent rect. 13 20
973 35.72 atmosphere 1015.0 90 < th dose independent rect. 7 21
986 35.73 wind 1.0 90 > th dose independent rect. 8 19
990 35.73 humidity 80.0 90 > th dose dependent rect. 5 6
995 35.74 temperature 30.0 270 < th dose independent rect. 7 2