BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0566100 Os09g0566100|AK065725
         (1069 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0566100  ENTH/VHS domain containing protein                 1928   0.0  
Os08g0187700  Regulation of nuclear pre-mRNA protein domain ...   181   3e-45

>Os09g0566100 ENTH/VHS domain containing protein
          Length = 1069

 Score = 1928 bits (4995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 960/1069 (89%), Positives = 960/1069 (89%)

Query: 1    MRASAAPMETXXXXXXXXXPDPKKPRLAQHPAPRDPRSYPAAANGNAPAVDQAQVDELVA 60
            MRASAAPMET         PDPKKPRLAQHPAPRDPRSYPAAANGNAPAVDQAQVDELVA
Sbjct: 1    MRASAAPMETSASARRSAAPDPKKPRLAQHPAPRDPRSYPAAANGNAPAVDQAQVDELVA 60

Query: 61   QYRTALGELTFNSKPIITNLTIIAGENLHAAKPIASLICANILEVPSEQKLPSLYLLDSI 120
            QYRTALGELTFNSKPIITNLTIIAGENLHAAKPIASLICANILEVPSEQKLPSLYLLDSI
Sbjct: 61   QYRTALGELTFNSKPIITNLTIIAGENLHAAKPIASLICANILEVPSEQKLPSLYLLDSI 120

Query: 121  VKNIGKDYVKHFSARLPEVFCKAYKQVDSSIHNSMRHLFGTWKGVFSPTSLQVIEKELGF 180
            VKNIGKDYVKHFSARLPEVFCKAYKQVDSSIHNSMRHLFGTWKGVFSPTSLQVIEKELGF
Sbjct: 121  VKNIGKDYVKHFSARLPEVFCKAYKQVDSSIHNSMRHLFGTWKGVFSPTSLQVIEKELGF 180

Query: 181  QSSTNGSSGAAPSKPDSQSNRPSHSIHVNPKYLEARQQLQQPNKGQGILGAGAKTTTISD 240
            QSSTNGSSGAAPSKPDSQSNRPSHSIHVNPKYLEARQQLQQPNKGQGILGAGAKTTTISD
Sbjct: 181  QSSTNGSSGAAPSKPDSQSNRPSHSIHVNPKYLEARQQLQQPNKGQGILGAGAKTTTISD 240

Query: 241  SGDDIERTSRTAVDRGAGRRLDALNPRTNVQRAQRDPFSNPIHEKQDRDMRVLGFSNISQ 300
            SGDDIERTSRTAVDRGAGRRLDALNPRTNVQRAQRDPFSNPIHEKQDRDMRVLGFSNISQ
Sbjct: 241  SGDDIERTSRTAVDRGAGRRLDALNPRTNVQRAQRDPFSNPIHEKQDRDMRVLGFSNISQ 300

Query: 301  QAVVGTGLVRAKPKGQDGSGGPYYTAGVGSSEEQFDRRSNFYANKDVRPSGSVRLDGALL 360
            QAVVGTGLVRAKPKGQDGSGGPYYTAGVGSSEEQFDRRSNFYANKDVRPSGSVRLDGALL
Sbjct: 301  QAVVGTGLVRAKPKGQDGSGGPYYTAGVGSSEEQFDRRSNFYANKDVRPSGSVRLDGALL 360

Query: 361  PTPVSNSDRIGRPXXXXXXXXXXXXXYMWDDVRSQGADYGGTSSTRKREWIPDDGNVGSF 420
            PTPVSNSDRIGRP             YMWDDVRSQGADYGGTSSTRKREWIPDDGNVGSF
Sbjct: 361  PTPVSNSDRIGRPSSNKSWKNSEEEEYMWDDVRSQGADYGGTSSTRKREWIPDDGNVGSF 420

Query: 421  QRVKWAEAGGPLDPDQHKLDSFQRFGNATGQDRRITPYMDHEEYLHGKHEVEPRIDREML 480
            QRVKWAEAGGPLDPDQHKLDSFQRFGNATGQDRRITPYMDHEEYLHGKHEVEPRIDREML
Sbjct: 421  QRVKWAEAGGPLDPDQHKLDSFQRFGNATGQDRRITPYMDHEEYLHGKHEVEPRIDREML 480

Query: 481  PEGQPFXXXXXXXXXXXHEKPLPDIVSDPRISAFSNQPADRPTIYAGTLSTSITSSVPVG 540
            PEGQPF           HEKPLPDIVSDPRISAFSNQPADRPTIYAGTLSTSITSSVPVG
Sbjct: 481  PEGQPFSSSRGSSLWLSHEKPLPDIVSDPRISAFSNQPADRPTIYAGTLSTSITSSVPVG 540

Query: 541  LSAAYAGRSSLESAATRSTETIGQQKNRYWSTSSPPVQSPSASFARQSSPSPVELDYSSK 600
            LSAAYAGRSSLESAATRSTETIGQQKNRYWSTSSPPVQSPSASFARQSSPSPVELDYSSK
Sbjct: 541  LSAAYAGRSSLESAATRSTETIGQQKNRYWSTSSPPVQSPSASFARQSSPSPVELDYSSK 600

Query: 601  PFSQLGQNSLEDYNQRTHALAQNLALSQGRPNLLGAPSHASQQIEKHPSLLQSKPHLRTL 660
            PFSQLGQNSLEDYNQRTHALAQNLALSQGRPNLLGAPSHASQQIEKHPSLLQSKPHLRTL
Sbjct: 601  PFSQLGQNSLEDYNQRTHALAQNLALSQGRPNLLGAPSHASQQIEKHPSLLQSKPHLRTL 660

Query: 661  DQPQANFSPENSSSVFKSSIQLPISVGVGHRQPEEVXXXXXXXXXXXXXXXXXXXXXXXX 720
            DQPQANFSPENSSSVFKSSIQLPISVGVGHRQPEEV                        
Sbjct: 661  DQPQANFSPENSSSVFKSSIQLPISVGVGHRQPEEVSLSSDSTLMSSDHLSASSLLAGLI 720

Query: 721  XXGFKPNDPNDLASLRAQXXXXXXXXXHVXXXXXXXXXXXXXXXXDTLKSQAXXXXXXXX 780
              GFKPNDPNDLASLRAQ         HV                DTLKSQA        
Sbjct: 721  KSGFKPNDPNDLASLRAQPPLPSGPPPHVSTSFSAASSSLHLPASDTLKSQAPNSLRPPL 780

Query: 781  XXXXXXXXXFVCPTTQTSEKAAPXXXXXXXXVAKGLISSPSADSTVAIPQQPCKSELNTP 840
                     FVCPTTQTSEKAAP        VAKGLISSPSADSTVAIPQQPCKSELNTP
Sbjct: 781  PPGLPLSSPFVCPTTQTSEKAAPLSSLLSSLVAKGLISSPSADSTVAIPQQPCKSELNTP 840

Query: 841  DDTASAPSLPFVQPSVKKETSNQNSSAPSKVLVHQPVEIKKEPAEIKMVDLIGFDFKPEM 900
            DDTASAPSLPFVQPSVKKETSNQNSSAPSKVLVHQPVEIKKEPAEIKMVDLIGFDFKPEM
Sbjct: 841  DDTASAPSLPFVQPSVKKETSNQNSSAPSKVLVHQPVEIKKEPAEIKMVDLIGFDFKPEM 900

Query: 901  LRKYHAHVISTLFDDQSHQCNTCGLRFSLEEELSVHTACHGSKQSETRKTGIAPEKWYPS 960
            LRKYHAHVISTLFDDQSHQCNTCGLRFSLEEELSVHTACHGSKQSETRKTGIAPEKWYPS
Sbjct: 901  LRKYHAHVISTLFDDQSHQCNTCGLRFSLEEELSVHTACHGSKQSETRKTGIAPEKWYPS 960

Query: 961  KNNWVDRSHEVQNSALESASSVADLSSEEEVCEFMVPADESQIICALCGESFDDIYSIEK 1020
            KNNWVDRSHEVQNSALESASSVADLSSEEEVCEFMVPADESQIICALCGESFDDIYSIEK
Sbjct: 961  KNNWVDRSHEVQNSALESASSVADLSSEEEVCEFMVPADESQIICALCGESFDDIYSIEK 1020

Query: 1021 DNWMYKDAVYFDSSKTEGSSGDSAESKERVPIVHARCMSISSNDGMEVD 1069
            DNWMYKDAVYFDSSKTEGSSGDSAESKERVPIVHARCMSISSNDGMEVD
Sbjct: 1021 DNWMYKDAVYFDSSKTEGSSGDSAESKERVPIVHARCMSISSNDGMEVD 1069



>Os08g0187700 Regulation of nuclear pre-mRNA protein domain containing protein
          Length = 971

 Score =  181 bits (458), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 95/159 (59%), Positives = 114/159 (71%), Gaps = 3/159 (1%)

Query: 66  LGELTFNSKPIITNLTIIAGENLH-AAKPIASLICANILEVPSEQKLPSLYLLDSIVKNI 124
           L ELTFN KPIIT LTIIAG++   AA+ IA  ICA I EV ++QKLPSLYLLDSIVKNI
Sbjct: 51  LSELTFNCKPIITELTIIAGQHAALAARGIADAICARIAEVSADQKLPSLYLLDSIVKNI 110

Query: 125 GKDYVKHFSARLPEVFCKAYKQVDSSIHNSMRHLFGTWKGVFSPTSLQVIEKELGFQSST 184
           G++YV HF+ARL +VFC AY++V  + H +MRHLFGTW  VF  + L+ IE EL F    
Sbjct: 111 GREYVGHFAARLQKVFCDAYRKVHRNQHAAMRHLFGTWSQVFPSSVLRGIEDELQFSPLE 170

Query: 185 NGSSGAAPSKPDSQSNRP--SHSIHVNPKYLEARQQLQQ 221
           N  S  A     S+S  P  SH+IHVNPKYLEA+QQ +Q
Sbjct: 171 NKRSATATDIRQSESISPRLSHAIHVNPKYLEAQQQFKQ 209




 Score =  119 bits (299), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 95/177 (53%), Gaps = 10/177 (5%)

Query: 890  DLIGFDFKPEMLRKYHAHVISTLFDDQSHQCNTCGLRFSLEEELSVHTACHGSKQSETRK 949
            D +G DF  + L+  +  VI+ L+ D   QC TCGLRF  +EE   H   H +K   ++ 
Sbjct: 801  DSVGVDFNVD-LKVRNESVINALYQDLPRQCKTCGLRFKCQEEHRAHMDWHVTKNRNSKN 859

Query: 950  TGIAPEKWYPSKNNWVDRSHEVQNS---ALESASSVADLSSEEEVCEFMVPADESQIICA 1006
                  K++ +   W+  +  V N    + E A  VAD   E+E+    VPADE Q  CA
Sbjct: 860  RKQTSRKYFVTVGEWLRAAETVGNDGVPSFEPAEPVADAKEEKELA---VPADEDQTTCA 916

Query: 1007 LCGESFDDIYSIEKDNWMYKDAVYFDSSKTEGSSGDSAESKERVPIVHARCMSISSN 1063
            LC E F+D YS E + WMYK AVY ++   +G+ G   E  +  PIVHA+C+S  +N
Sbjct: 917  LCQEPFEDFYSDETEEWMYKGAVYMNAP--DGNIG-GLERSQLGPIVHAKCLSGPNN 970



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.128    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 34,928,186
Number of extensions: 1559478
Number of successful extensions: 4433
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4428
Number of HSP's successfully gapped: 3
Length of query: 1069
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 958
Effective length of database: 11,240,047
Effective search space: 10767965026
Effective search space used: 10767965026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 161 (66.6 bits)