Os08g0187700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Regulation of nuclear pre-mRNA protein domain containing protein.
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Os08g0187700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Regulation of nuclear pre-mRNA protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.31 | 0.25 | 11.1 | 1.17 | 0.603 | -0.482 | 0.402 | 2.23 | 0.614 | 5.08 | 16.11 | 729 | -- | -- |
| 31.83 | 0.263 | 11.2 | 0.955 | 0.705 | -0.484 | 0.206 | -- | 0.598 | 5.38 | 14.9 | 11231 | -- | -- |
| 28.26 | 0.248 | 11.1 | 1.24 | 0.68 | -0.411 | -- | 2.15 | 0.631 | 5.29 | 16.96 | 1092 | -- | -- |
| 31.67 | 0.262 | 11.2 | 0.916 | 0.671 | -0.466 | -- | -- | 0.585 | 5.51 | 13.11 | 10762 | -- | -- |
| 39.4 | 0.292 | 11.2 | 0.993 | -- | -0.923 | -- | 1.62 | 0.554 | -- | 24.5 | 318 | -- | -- |
| 35.17 | 0.278 | 11.2 | 0.618 | 0.672 | -- | 0.154 | -- | 0.425 | 5.56 | -- | -- | -- | -- |
| 35.23 | 0.278 | 11.2 | 0.619 | 0.673 | -- | -- | -- | 0.425 | 5.6 | -- | -- | -- | -- |
| 41.24 | 0.299 | 11.2 | 0.764 | -- | -0.782 | -- | -- | 0.5 | -- | 24.82 | 330 | -- | -- |
| 40.78 | 0.297 | 11.2 | -- | 0.674 | 0.344 | -- | -- | 0.253 | 5.62 | -2.612 | 47520 | -- | -- |
| 58.76 | 0.358 | 11.2 | 0.641 | -- | -- | -- | -- | 0.441 | -- | -- | -- | -- | -- |
| 45.34 | 0.315 | 11.2 | -- | 0.683 | -- | -- | -- | 0.356 | 5.56 | -- | -- | -- | -- |
| 56.23 | 0.349 | 11.2 | -- | -- | -0.678 | -- | -- | 0.405 | -- | 25 | 322 | -- | -- |
| 69.61 | 0.389 | 11.2 | -- | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 3 | 27.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 4 | 27.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 8 | 27.40 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 15 |
| 11 | 27.42 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 25 | 27.50 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 26 | 27.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 51 | 27.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 71 | 27.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 86 | 27.76 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 96 | 27.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 106 | 27.81 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 151 | 27.89 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 16 |
| 175 | 27.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 17 |
| 188 | 27.94 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 243 | 28.01 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 264 | 28.04 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 5 |
| 324 | 28.11 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 10 |
| 326 | 28.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 362 | 28.15 | radiation | 1 | 90 | < th | dose independent | sin | 11 | NA |
| 437 | 28.23 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 438 | 28.23 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 459 | 28.25 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 536 | 28.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 549 | 28.32 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 569 | 28.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 572 | 28.33 | radiation | 1 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 599 | 28.37 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 651 | 28.41 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 663 | 28.42 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 678 | 28.43 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 703 | 28.45 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 705 | 28.45 | radiation | 1 | 90 | < th | dose dependent | sin | 10 | NA |
| 716 | 28.46 | humidity | 90 | 14400 | > th | dose independent | sin | 13 | NA |
| 734 | 28.47 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 780 | 28.49 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 824 | 28.52 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 847 | 28.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 897 | 28.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 989 | 28.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 7 |