BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0553700 Os09g0553700|AK070189
         (287 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0553700  Similar to PRLI-interacting factor A (Fragment)     239   2e-63
Os02g0832600  Conserved hypothetical protein                      128   4e-30

>Os09g0553700 Similar to PRLI-interacting factor A (Fragment)
          Length = 287

 Score =  239 bits (610), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/265 (53%), Positives = 141/265 (53%)

Query: 1   MNDPMMRPPAXXXXXXXXXXXXXXXXXXXXXXXXXGVKPVRPAWKRVARQPGWKQRKXXX 60
           MNDPMMRPPA                         GVKPVRPAWKRVARQPGWKQRK   
Sbjct: 1   MNDPMMRPPAQQPPLQYQMWPPPPPPVMELPVVFVGVKPVRPAWKRVARQPGWKQRKAAA 60

Query: 61  XXXXXXXXXXXXXXPRNTTSYLIRAKRAGGVASLVSPCPVTPAVLPTPQLSPAREVVVEM 120
                         PRNTTSYLIRAKRAGGVASLVSPCPVTPAVLPTPQLSPAREVVVEM
Sbjct: 61  SAAAVGARWGGAAAPRNTTSYLIRAKRAGGVASLVSPCPVTPAVLPTPQLSPAREVVVEM 120

Query: 121 AKEKWGVDGYGSMKGLIRLRSQAADAGGLPXXXXXXXXXXXXXXXXXXRRLDHDLSRFEM 180
           AKEKWGVDGYGSMKGLIRLRSQAADAGGLP                  RRLDHDLSRFEM
Sbjct: 121 AKEKWGVDGYGSMKGLIRLRSQAADAGGLPGEDSGSGESDVEEHVEVERRLDHDLSRFEM 180

Query: 181 VQLPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVETLCR 240
           VQLPV                                                AVETLCR
Sbjct: 181 VQLPVAAGDCEDDEDDDDGDEARTARLEEENLTLRERLFLMERDMDDLRRRLLAVETLCR 240

Query: 241 DRHRXXXXXXXXXXXXXXXXLSESV 265
           DRHR                LSESV
Sbjct: 241 DRHRDGCVVDAAGVVAEETVLSESV 265



>Os02g0832600 Conserved hypothetical protein
          Length = 351

 Score =  128 bits (322), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 76/108 (70%), Gaps = 1/108 (0%)

Query: 75  PRNTTSYLIRAKRAGGVASLVSPCPVTPAVLPTPQLSPAREVVVEMAKEKWGVDGYGSMK 134
           PRNTTS++IRAKRAGG+ASLVSP PVTPAVLPTP+LSP+RE + +MA+ +WGVDGYGSMK
Sbjct: 93  PRNTTSFIIRAKRAGGIASLVSPSPVTPAVLPTPRLSPSREGLSDMAQAQWGVDGYGSMK 152

Query: 135 GLIRLRSQ-AADAGGLPXXXXXXXXXXXXXXXXXXRRLDHDLSRFEMV 181
           GLIRLR+                            RRLDHDLSRFEMV
Sbjct: 153 GLIRLRTSPHPANPSDDDDDANSSGSDVEEHVEVERRLDHDLSRFEMV 200



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,282,155
Number of extensions: 170900
Number of successful extensions: 689
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 685
Number of HSP's successfully gapped: 2
Length of query: 287
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 187
Effective length of database: 11,814,401
Effective search space: 2209292987
Effective search space used: 2209292987
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)