BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0550000 Os09g0550000|AK067716
(567 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0550000 Bromodomain containing protein 1015 0.0
Os03g0130800 Bromodomain containing protein 286 2e-77
Os03g0332366 86 9e-17
Os10g0415900 Similar to General control of amino-acid synth... 71 3e-12
>Os09g0550000 Bromodomain containing protein
Length = 567
Score = 1015 bits (2625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/541 (91%), Positives = 497/541 (91%)
Query: 27 SLLDLQKRTLRLEKLQEXXXXXXXXXXXXXXXXXXAGVDSGDEGTAPGGRREKKLRLVMG 86
SLLDLQKRTLRLEKLQE AGVDSGDEGTAPGGRREKKLRLVMG
Sbjct: 27 SLLDLQKRTLRLEKLQEPPPPPPPPQPRRSTRRNPAGVDSGDEGTAPGGRREKKLRLVMG 86
Query: 87 LPDGSAKGEKTRKATDGSEEPSDSGPTTPLPDKKLLVFVLDRLQKKDTYGVFSDPVDPEE 146
LPDGSAKGEKTRKATDGSEEPSDSGPTTPLPDKKLLVFVLDRLQKKDTYGVFSDPVDPEE
Sbjct: 87 LPDGSAKGEKTRKATDGSEEPSDSGPTTPLPDKKLLVFVLDRLQKKDTYGVFSDPVDPEE 146
Query: 147 LPDYHDIIKHPMDFSTIRKKLNKGAYGNLEQFEDDVFLLTSNAMCYNSPDTIYYRQARAI 206
LPDYHDIIKHPMDFSTIRKKLNKGAYGNLEQFEDDVFLLTSNAMCYNSPDTIYYRQARAI
Sbjct: 147 LPDYHDIIKHPMDFSTIRKKLNKGAYGNLEQFEDDVFLLTSNAMCYNSPDTIYYRQARAI 206
Query: 207 QELAKKDFENLRQDSDASXXXXXXXXXXXXXXXXXXRRGRPPNKNTIKQKVGKPPVERAT 266
QELAKKDFENLRQDSDAS RRGRPPNKNTIKQKVGKPPVERAT
Sbjct: 207 QELAKKDFENLRQDSDASEPEPEPEIKPDPEPKPQPRRGRPPNKNTIKQKVGKPPVERAT 266
Query: 267 ADFSGATLASVGNNGHRTQPPFDLQRQVMNGSFIADVLRASFASRNNGYNWSNERKLERI 326
ADFSGATLASVGNNGHRTQPPFDLQRQVMNGSFIADVLRASFASRNNGYNWSNERKLERI
Sbjct: 267 ADFSGATLASVGNNGHRTQPPFDLQRQVMNGSFIADVLRASFASRNNGYNWSNERKLERI 326
Query: 327 EDYSGSIGKWSAKSGRKPILTEESSRSTYCQPQPSSSIYELPVSSSYNETRKLLVPVGVQ 386
EDYSGSIGKWSAKSGRKPILTEESSRSTYCQPQPSSSIYELPVSSSYNETRKLLVPVGVQ
Sbjct: 327 EDYSGSIGKWSAKSGRKPILTEESSRSTYCQPQPSSSIYELPVSSSYNETRKLLVPVGVQ 386
Query: 387 LQQSYPRSLARFAAQLGPVAWEIASKRIERALPPGTKFGRGWVGDGEAPNATQPPVLTTS 446
LQQSYPRSLARFAAQLGPVAWEIASKRIERALPPGTKFGRGWVGDGEAPNATQPPVLTTS
Sbjct: 387 LQQSYPRSLARFAAQLGPVAWEIASKRIERALPPGTKFGRGWVGDGEAPNATQPPVLTTS 446
Query: 447 STALIHPXXXXXXXXQPTHNGTASTSHSAGPQPSSAPYASSTITTHRVNCQSLPSQQHGS 506
STALIHP QPTHNGTASTSHSAGPQPSSAPYASSTITTHRVNCQSLPSQQHGS
Sbjct: 447 STALIHPSSTETSSEQPTHNGTASTSHSAGPQPSSAPYASSTITTHRVNCQSLPSQQHGS 506
Query: 507 VPQVSAERGEHGAEVKGNHNNLHERPAIQHTVNGFSAVSGSNIFPSAAQMVANRMQTHTA 566
VPQVSAERGEHGAEVKGNHNNLHERPAIQHTVNGFSAVSGSNIFPSAAQMVANRMQTHTA
Sbjct: 507 VPQVSAERGEHGAEVKGNHNNLHERPAIQHTVNGFSAVSGSNIFPSAAQMVANRMQTHTA 566
Query: 567 D 567
D
Sbjct: 567 D 567
>Os03g0130800 Bromodomain containing protein
Length = 619
Score = 286 bits (733), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 172/346 (49%), Positives = 211/346 (60%), Gaps = 47/346 (13%)
Query: 108 SDSGPTT--PLPDKKLLVFVLDRLQKKDTYGVFSDPVDPEELPDYHDIIKHPMDFSTIRK 165
SD GPTT PLPDKKLL+F+LDRLQKKDTYGVFS+PVD EELPDYH+II+HPMDFSTIR+
Sbjct: 85 SDGGPTTGTPLPDKKLLLFILDRLQKKDTYGVFSEPVDHEELPDYHEIIEHPMDFSTIRE 144
Query: 166 KLNKGAYGNLEQFEDDVFLLTSNAMCYNSPDTIYYRQARAIQELAKKDFENLRQDSDASX 225
KL +Y LEQFE+DVFLLTSNAM YNS DT+YYRQAR+I+ LAKKDFENLRQ S+
Sbjct: 145 KLLNDSYTTLEQFENDVFLLTSNAMSYNSDDTVYYRQARSIEALAKKDFENLRQASEPE- 203
Query: 226 XXXXXXXXXXXXXXXXXRRGRPPNKNTIKQKVGKPPVERATADFSGATLASVGN------ 279
RRGRPP +K+ K + + D S A S +
Sbjct: 204 --------EEQQPKTVPRRGRPPK---YAKKIEKTEND-VSPDLSNAKTKSADHAETIRK 251
Query: 280 --NGHRTQPPFDLQRQVMNGSFIADVLRASFASRNNGYNWSNERKLERIEDYSGSIGKWS 337
G RT+ + + F+ SFA ++ +R DYSG
Sbjct: 252 RLTGDRTR---NANITTRDSPFLQHNTPGSFAG----------KRTDRFGDYSG-----P 293
Query: 338 AKSGRK--PILTEESSRSTYCQPQPSSSIYELPVSSSYNETRKLLVPVGVQLQQSYPRSL 395
+K G+K P ++++ RSTY Q SS P+ S+ RK+LVPVG+Q Q +Y RSL
Sbjct: 294 SKYGKKTTPTISDDERRSTYDQQYFHSS----PLFSALGGERKVLVPVGLQQQHAYARSL 349
Query: 396 ARFAAQLGPVAWEIASKRIERALPPGTKFGRGWVGDGEAPNATQPP 441
ARFAA+ GPV W+IA+KRI R LP GT FG GWV DGE P +Q P
Sbjct: 350 ARFAAKFGPVGWDIAAKRIRRLLPSGTNFGPGWVVDGEPPENSQWP 395
>Os03g0332366
Length = 575
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 120 KLLVFVLDRLQKKDTYGVFSDPVDPEELPDYHDIIKHPMDFSTIRKKLNKGAYGNLEQFE 179
+++ ++LD L+ +DT+ +F+ P D ++ DY + + P DF+T+R+K G Y LEQFE
Sbjct: 100 QIIEYILDTLEMRDTHELFAMP-DDIQVTDYAERVNRPGDFATLRQKNKDGMYNTLEQFE 158
Query: 180 DDVFLLTSNAMCYNSPDTIYYRQARAIQELAKKDFENLRQD 220
+DV+++ AM NS DTI YR+A ++ AK+ F +L+ +
Sbjct: 159 NDVYMVFQKAMSINSEDTIPYREAMSLLHQAKQVFLSLKSN 199
>Os10g0415900 Similar to General control of amino-acid synthesis 5-like 2
(Fragment)
Length = 511
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 138 FSDPVDPEELPDYHDIIKHPMDFSTIRKKL-NKGAYGNLEQFEDDVFLLTSNAMCYNSPD 196
F +PVD ++PDY+DIIK P+D T+ K++ ++ Y LE F D+ + SNA YNSPD
Sbjct: 423 FKEPVDSRDVPDYYDIIKDPIDLKTMSKRVESEQYYVTLEMFVADMKRMFSNAKTYNSPD 482
Query: 197 TIYYRQARAIQEL 209
TIYY+ A ++
Sbjct: 483 TIYYKCASRLESF 495
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,854,920
Number of extensions: 828436
Number of successful extensions: 2126
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2121
Number of HSP's successfully gapped: 4
Length of query: 567
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 461
Effective length of database: 11,501,117
Effective search space: 5302014937
Effective search space used: 5302014937
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)