Os09g0550000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Bromodomain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0550000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Bromodomain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.49 | 0.264 | 9.61 | 0.488 | 0.676 | -0.818 | -0.608 | -0.426 | 0.158 | 6.16 | 19.57 | 49 | -- | -- |
| 31.66 | 0.262 | 9.6 | 0.55 | 0.678 | -0.831 | -0.563 | -- | 0.171 | 6.16 | 19.7 | 50 | -- | -- |
| 32.34 | 0.265 | 9.6 | 0.513 | 0.678 | -0.805 | -- | -0.21 | 0.167 | 6.13 | 19.7 | 49 | -- | -- |
| 32.39 | 0.265 | 9.6 | 0.549 | 0.676 | -0.819 | -- | -- | 0.178 | 6.14 | 19.7 | 50 | -- | -- |
| 49.39 | 0.327 | 9.59 | 0.695 | -- | -1.2 | -- | 0.275 | 0.261 | -- | 20.94 | 176 | -- | -- |
| 42.34 | 0.305 | 9.63 | 0.37 | 0.901 | -- | -0.225 | -- | 0.0377 | 5.18 | -- | -- | -- | -- |
| 42.47 | 0.305 | 9.63 | 0.37 | 0.9 | -- | -- | -- | 0.0387 | 5.16 | -- | -- | -- | -- |
| 49.45 | 0.328 | 9.6 | 0.649 | -- | -1.19 | -- | -- | 0.25 | -- | 20.75 | 175 | -- | -- |
| 39.7 | 0.293 | 9.62 | -- | 0.714 | -0.644 | -- | -- | 0.0867 | 5.87 | 20.26 | 49 | -- | -- |
| 84.86 | 0.43 | 9.64 | 0.402 | -- | -- | -- | -- | 0.0614 | -- | -- | -- | -- | -- |
| 46.08 | 0.318 | 9.64 | -- | 0.906 | -- | -- | -- | -0.00248 | 5.14 | -- | -- | -- | -- |
| 59.28 | 0.359 | 9.62 | -- | -- | -1.03 | -- | -- | 0.128 | -- | 23.21 | 206 | -- | -- |
| 89.11 | 0.441 | 9.65 | -- | -- | -- | -- | -- | 0.0169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.66 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 58 | 29.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 59 | 29.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 63 | 30.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 67 | 30.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 161 | 30.97 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 162 | 30.98 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 167 | 31.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 207 | 31.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 210 | 31.37 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 19 |
| 213 | 31.44 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 20 |
| 245 | 31.65 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 246 | 31.66 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 250 | 31.66 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 258 | 31.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 267 | 31.73 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 292 | 31.83 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 298 | 31.87 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 17 |
| 312 | 31.91 | temperature | 20 | 30 | > th | dose dependent | rect. | 22 | 23 |
| 333 | 32.00 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 340 | 32.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 376 | 32.17 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 403 | 32.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 17 |
| 438 | 32.37 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 487 | 32.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 500 | 32.60 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 501 | 32.61 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 21 |
| 525 | 32.68 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 527 | 32.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 561 | 32.82 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 21 |
| 567 | 32.84 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 10 |
| 568 | 32.84 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 19 |
| 649 | 33.07 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 8 |
| 689 | 33.16 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 23 |
| 720 | 33.25 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 721 | 33.25 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 13 |
| 781 | 33.36 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 791 | 33.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 797 | 33.40 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 826 | 33.48 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 23 |
| 861 | 33.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 10 |
| 913 | 33.66 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 23 |
| 939 | 33.71 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 14 |
| 940 | 33.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 972 | 33.77 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 23 |
| 980 | 33.78 | radiation | 1 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 983 | 33.79 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 986 | 33.80 | temperature | 25 | 720 | < th | dose independent | sin | 20 | NA |
| 988 | 33.80 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 23 |