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Os03g0130800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bromodomain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0118) R2 : 0.686
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.949 (0.0307) R2dC : 0.661 R2C : 0.641
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.178 (0.0248) R2dN8 : 0.0458 R2N8 : 0.0257
σ : 0.222
deviance : 22.52
__
_____
C
peak time of C : 5.03
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.02 0.194 10.2 0.031 0.404 1.61 -0.00852 -0.502 -0.127 21.2 1.583 783 -- --
17.22 0.193 10.2 0.032 0.457 1.71 0.273 -- -0.128 20.1 0.9521 763 -- --
17.02 0.192 10.2 0.0323 0.409 1.62 -- -0.494 -0.126 21.3 1.544 786 -- --
17.34 0.194 10.2 0.0163 0.437 1.65 -- -- -0.128 21.3 1.535 796 -- --
18.26 0.199 10.2 0.0126 -- 1.14 -- -0.537 -0.151 -- 0.78 664 -- --
22.04 0.22 10.2 -0.113 0.952 -- -0.233 -- -0.192 5.03 -- -- -- --
22.18 0.221 10.2 -0.113 0.951 -- -- -- -0.19 5.03 -- -- -- --
18.56 0.201 10.2 -0.0185 -- 1.12 -- -- -0.144 -- 0.78 668 -- --
17.35 0.194 10.2 -- 0.426 1.62 -- -- -0.131 21.4 1.564 796 -- --
69.67 0.39 10.2 -0.0787 -- -- -- -- -0.166 -- -- -- -- --
22.52 0.222 10.2 -- 0.949 -- -- -- -0.178 5.03 -- -- -- --
18.57 0.201 10.2 -- -- 1.12 -- -- -0.14 -- 0.7653 666 -- --
69.83 0.39 10.2 -- -- -- -- -- -0.157 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.24 temperature 10 270 > th dose dependent rect. 6 20
40 16.53 radiation 1 720 < th dose dependent rect. 5 18
54 16.67 radiation 1 720 < th dose dependent rect. 3 21
71 16.80 temperature 30 90 < th dose dependent rect. 11 22
73 16.81 radiation 1 720 < th dose dependent sin 13 NA
74 16.81 radiation 1 270 < th dose dependent rect. 4 14
86 16.88 radiation 1 720 < th dose dependent rect. 15 8
88 16.90 temperature 30 90 < th dose dependent rect. 14 18
97 16.94 temperature 30 90 < th dose dependent rect. 3 20
121 17.01 radiation 1 720 < th dose independent rect. 4 19
125 17.01 temperature 30 10 < th dose dependent rect. 3 21
129 17.03 radiation 1 270 < th dose independent rect. 4 14
130 17.03 radiation 1 270 > th dose independent rect. 16 23
135 17.04 radiation 1 720 < th dose independent rect. 7 16
144 17.07 radiation 1 720 < th dose dependent rect. 14 18
154 17.09 radiation 1 720 < th dose independent rect. 15 8
166 17.12 temperature 30 30 < th dose dependent rect. 5 15
172 17.14 radiation 1 720 < th dose independent rect. 3 21
193 17.18 radiation 1 720 > th dose independent sin 14 NA
201 17.19 radiation 1 720 > th dose independent rect. 16 14
213 17.20 radiation 1 720 < th dose dependent rect. 10 22
215 17.20 radiation 1 720 < th dose dependent rect. 20 23
216 17.21 radiation 1 720 > th dose independent rect. 15 4
232 17.21 temperature 30 90 < th dose dependent rect. 1 23
245 17.24 radiation 1 720 < th dose independent sin 14 NA
258 17.25 temperature 30 90 < th dose dependent rect. 13 22
260 17.25 radiation 1 720 < th dose dependent rect. 7 23
268 17.27 radiation 1 720 < th dose dependent no NA NA
283 17.30 radiation 1 720 > th dose independent rect. 6 13
296 17.30 wind 5 43200 > th dose dependent rect. 15 1
315 17.33 temperature 30 10 < th dose dependent rect. 12 21
325 17.35 humidity 80 43200 < th dose independent rect. 4 1
386 17.42 humidity 80 43200 < th dose independent rect. 20 12
387 17.42 radiation 1 720 < th dose dependent sin 23 NA
388 17.42 radiation 1 270 < th dose dependent sin 1 NA
389 17.42 humidity 80 43200 < th dose dependent rect. 21 2
407 17.45 humidity 80 43200 > th dose independent rect. 21 2
408 17.45 humidity 80 43200 < th dose independent rect. 21 2
418 17.46 humidity 80 43200 < th dose dependent rect. 20 10
424 17.47 radiation 1 270 > th dose independent sin 1 NA
425 17.47 humidity 80 43200 > th dose independent rect. 3 2
431 17.48 radiation 1 270 < th dose independent sin 1 NA
436 17.48 humidity 80 43200 < th dose dependent rect. 20 6
460 17.50 temperature 25 720 > th dose dependent rect. 15 3
470 17.51 radiation 1 720 < th dose independent rect. 7 23
477 17.51 temperature 25 720 > th dose dependent rect. 15 20
489 17.52 wind 3 43200 < th dose dependent rect. 8 4
495 17.52 humidity 70 90 > th dose dependent rect. 4 19
512 17.53 humidity 60 90 > th dose dependent rect. 4 15
516 17.54 wind 3 43200 > th dose dependent rect. 11 6
542 17.55 wind 9 43200 < th dose dependent rect. 10 6
551 17.56 wind 7 43200 > th dose independent rect. 15 1
552 17.56 wind 7 43200 < th dose independent rect. 15 1
565 17.57 wind 9 43200 < th dose dependent rect. 11 4
570 17.58 wind 7 14400 < th dose independent rect. 10 6
574 17.58 wind 1 43200 < th dose dependent rect. 24 2
591 17.59 temperature 10 270 > th dose dependent rect. 16 23
596 17.60 humidity 80 43200 > th dose independent rect. 20 11
605 17.60 temperature 30 30 < th dose dependent rect. 21 23
623 17.62 humidity 80 43200 > th dose independent rect. 21 9
628 17.62 radiation 1 720 < th dose independent rect. 13 20
630 17.62 radiation 1 720 < th dose independent rect. 20 23
631 17.62 wind 3 14400 > th dose dependent rect. 11 1
635 17.62 wind 3 43200 > th dose dependent rect. 11 11
645 17.63 radiation 1 720 < th dose independent rect. 13 22
646 17.63 wind 3 43200 < th dose dependent rect. 9 1
672 17.64 wind 7 14400 < th dose independent rect. 5 11
715 17.66 wind 1 43200 < th dose independent rect. 24 2
720 17.66 wind 7 14400 > th dose independent rect. 10 6
727 17.66 wind 7 14400 > th dose independent rect. 5 11
744 17.66 radiation 1 720 < th dose independent rect. 10 23
759 17.67 radiation 1 720 > th dose independent no NA NA
825 17.67 wind 9 43200 < th dose dependent rect. 9 13
831 17.68 radiation 1 720 < th dose independent no NA NA
832 17.68 wind 5 14400 > th dose independent rect. 11 1
857 17.68 temperature 20 270 > th dose dependent rect. 16 22
858 17.69 radiation 1 720 < th dose independent sin 22 NA
860 17.69 wind 3 43200 > th dose independent rect. 9 5
886 17.69 wind 1 43200 < th dose dependent rect. 8 20
901 17.70 wind 9 43200 < th dose dependent rect. 12 2
904 17.70 humidity 80 43200 < th dose dependent rect. 3 3
919 17.71 radiation 1 720 > th dose independent sin 22 NA
921 17.71 wind 5 14400 < th dose independent rect. 11 1
928 17.71 wind 9 43200 < th dose dependent sin 22 NA
960 17.72 wind 3 43200 > th dose dependent sin 20 NA
979 17.72 temperature 30 10 < th dose dependent rect. 13 23