BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0542200 Os09g0542200|AK064887
(237 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0542200 Thioredoxin fold domain containing protein 454 e-128
Os04g0227500 DSBA oxidoreductase family protein 213 8e-56
>Os09g0542200 Thioredoxin fold domain containing protein
Length = 237
Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 16 CAVAASCSYYLLVLHAQASVPPRYDGFAYGDAATAAWKDTILVEAFLDPLCPDSRDAWAP 75
CAVAASCSYYLLVLHAQASVPPRYDGFAYGDAATAAWKDTILVEAFLDPLCPDSRDAWAP
Sbjct: 16 CAVAASCSYYLLVLHAQASVPPRYDGFAYGDAATAAWKDTILVEAFLDPLCPDSRDAWAP 75
Query: 76 LRLAVDRYAPRVSLIVHPFPLPYHTNSFLACRALYIANKLNSSSTYPLLELFFKSQGKFY 135
LRLAVDRYAPRVSLIVHPFPLPYHTNSFLACRALYIANKLNSSSTYPLLELFFKSQGKFY
Sbjct: 76 LRLAVDRYAPRVSLIVHPFPLPYHTNSFLACRALYIANKLNSSSTYPLLELFFKSQGKFY 135
Query: 136 NAATSSLSSTVISGEMSKLAARVVGNSVSEFQSGFSDIRTDLAARVSFKYGCTRGVAGAP 195
NAATSSLSSTVISGEMSKLAARVVGNSVSEFQSGFSDIRTDLAARVSFKYGCTRGVAGAP
Sbjct: 136 NAATSSLSSTVISGEMSKLAARVVGNSVSEFQSGFSDIRTDLAARVSFKYGCTRGVAGAP 195
Query: 196 FFFVNGFLQPGGGSPIDYSTWVSILDPLAGQHGDRLEMFTSM 237
FFFVNGFLQPGGGSPIDYSTWVSILDPLAGQHGDRLEMFTSM
Sbjct: 196 FFFVNGFLQPGGGSPIDYSTWVSILDPLAGQHGDRLEMFTSM 237
>Os04g0227500 DSBA oxidoreductase family protein
Length = 226
Score = 213 bits (543), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 102/199 (51%), Positives = 141/199 (70%), Gaps = 4/199 (2%)
Query: 31 AQASVPPRYDGFAYGDAATAAWKDTILVEAFLDPLCPDSRDAWAPLRLAVDRYAPRVSLI 90
AQ VP R DGF YG A A +T++VEA+ DP+CPDSRDAW L+ AV+ YA RV+++
Sbjct: 28 AQVPVPARTDGFVYGGKAPA-LGETVVVEAYFDPVCPDSRDAWPELKKAVEHYASRVTVV 86
Query: 91 VHPFPLPYHTNSFLACRALYIANKLNSSSTYPLLELFFKSQGKFYNAATSSLSSTVISGE 150
VH FPLPYH+N+F++CR+++ NK+N S YPLLE FFK Q +YN T + + E
Sbjct: 87 VHLFPLPYHSNAFISCRSIHAVNKINPSFVYPLLERFFKYQEGYYNQPTYGKTRATVDAE 146
Query: 151 MSK-LAARVVGN-SVSEFQSGFSDIRTDLAARVSFKYGCTRGVAGAPFFFVNGF-LQPGG 207
++K L A V+G +++ +++GF+D ++D A R+SFKYGC RGV G P+FFVNG L
Sbjct: 147 VAKNLVAPVIGEANLAAYKAGFNDSKSDQATRISFKYGCARGVTGTPYFFVNGIPLISDS 206
Query: 208 GSPIDYSTWVSILDPLAGQ 226
GSP++Y+ W SILDPL G+
Sbjct: 207 GSPLEYNKWKSILDPLVGK 225
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,774,033
Number of extensions: 304875
Number of successful extensions: 620
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 617
Number of HSP's successfully gapped: 2
Length of query: 237
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 139
Effective length of database: 11,918,829
Effective search space: 1656717231
Effective search space used: 1656717231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)