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Os04g0227500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DSBA oxidoreductase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.47 (0.0384) R2 : 0.631
β1 : 0.623 (0.169) R2dD : 0.0192 R2D : -0.00695
β2 : 1.33 (0.0976) R2dC : 0.201 R2C : 0.241
β3 : -0.912 (0.205) R2dE : 0.0243 R2E : -0.00336
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.53 (0.731) R2dD*E : 0.0765 R2D*E : 0.105
γ1 : 1.24 (0.0857) R2dN8 : 0.289 R2N8 : 0.204
σ : 0.666
deviance : 204.5
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_____
C
peak time of C : 0.181
E
wheather : temperature
threshold : 12.21
memory length : 8
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
204.4 0.672 9.47 0.659 1.33 -0.916 0.181 -5.32 1.25 0.163 11.14 9 -- --
221.37 0.693 9.37 1.45 1.33 -1.03 1.3 -- 1.46 0.202 -20.3 51 -- --
204.5 0.666 9.47 0.623 1.33 -0.912 -- -5.53 1.24 0.181 12.21 8 -- --
225.08 0.699 9.37 1.39 1.26 -1.02 -- -- 1.47 0.0035 22.63 22 -- --
287.75 0.79 9.41 0.913 -- -2.32 -- -5.6 1.45 -- 14.39 7 -- --
230.33 0.711 9.41 1.24 1.59 -- 1.47 -- 1.32 0.541 -- -- -- --
239.5 0.725 9.41 1.18 1.59 -- -- -- 1.31 0.63 -- -- -- --
302.57 0.81 9.31 1.63 -- -2.02 -- -- 1.66 -- 20.53 2 -- --
270.82 0.766 9.43 -- 1.43 -0.595 -- -- 1.24 0.253 24.4 49 -- --
398.3 0.933 9.39 1.24 -- -- -- -- 1.34 -- -- -- -- --
276.49 0.778 9.44 -- 1.61 -- -- -- 1.18 0.665 -- -- -- --
367.6 0.893 9.38 -- -- -1.67 -- -- 1.36 -- 24.1 2 -- --
438.93 0.978 9.42 -- -- -- -- -- 1.2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 197.45 radiation 1.0 43200 < th dose dependent rect. 23 5
2 197.72 precipitation 0.1 4320 > th dose independent rect. 8 10
3 197.72 precipitation 0.1 4320 < th dose independent rect. 8 10
4 197.72 precipitation 0.1 4320 < th dose dependent rect. 8 10
8 197.89 atmosphere 1000.0 270 > th dose independent rect. 16 15
9 197.93 precipitation 0.1 4320 < th dose independent rect. 6 12
10 197.93 precipitation 0.1 4320 < th dose dependent rect. 6 12
11 197.94 precipitation 0.1 4320 > th dose independent rect. 6 12
15 198.34 precipitation 0.1 4320 > th dose independent rect. 15 3
18 198.55 precipitation 0.1 4320 < th dose independent rect. 14 4
19 198.55 precipitation 0.1 4320 < th dose dependent rect. 14 4
32 199.47 precipitation 0.1 4320 > th dose dependent rect. 6 12
34 199.56 wind 1.0 14400 < th dose independent rect. 5 1
43 200.27 wind 9.0 14400 > th dose dependent rect. 16 19
47 200.34 wind 9.0 14400 > th dose dependent rect. 16 14
63 200.71 wind 9.0 14400 > th dose dependent rect. 16 5
66 200.86 wind 9.0 14400 > th dose dependent rect. 16 7
67 200.86 humidity 50.0 90 > th dose dependent rect. 5 16
68 200.88 atmosphere 995.0 14400 > th dose independent rect. 7 12
73 200.94 wind 9.0 14400 > th dose dependent rect. 16 9
74 200.95 atmosphere 995.0 14400 > th dose independent rect. 7 14
81 201.06 atmosphere 1000.0 90 > th dose independent rect. 19 13
86 201.10 wind 7.0 14400 > th dose independent rect. 18 3
88 201.10 wind 5.0 14400 > th dose dependent rect. 20 1
89 201.17 wind 9.0 43200 > th dose independent rect. 16 15
93 201.23 wind 9.0 14400 > th dose independent rect. 17 12
105 201.28 wind 9.0 14400 < th dose independent rect. 17 12
107 201.29 wind 7.0 43200 < th dose independent rect. 19 1
119 201.42 humidity 90.0 10 < th dose dependent rect. 8 12
122 201.48 precipitation 0.1 43200 > th dose dependent rect. 16 2
125 201.52 wind 7.0 14400 < th dose independent rect. 18 3
134 201.65 atmosphere 995.0 14400 > th dose independent rect. 13 6
139 201.69 atmosphere 1005.0 14400 < th dose independent rect. 22 1
144 201.71 humidity 90.0 10 < th dose dependent rect. 8 17
145 201.72 atmosphere 995.0 14400 > th dose independent rect. 13 8
147 201.73 humidity 50.0 10 > th dose dependent sin 23 NA
153 201.80 atmosphere 995.0 14400 < th dose independent rect. 15 2
154 201.81 humidity 90.0 10 < th dose dependent sin 0 NA
158 201.86 wind 9.0 14400 > th dose independent rect. 17 8
227 202.05 atmosphere 995.0 14400 < th dose dependent rect. 15 3
235 202.09 humidity 90.0 90 < th dose dependent sin 1 NA
285 202.14 radiation 10.0 270 < th dose dependent rect. 3 15
302 202.25 atmosphere 995.0 14400 > th dose independent rect. 10 9
314 202.30 atmosphere 1000.0 14400 < th dose independent rect. 12 1
315 202.30 atmosphere 1000.0 270 > th dose independent rect. 12 20
318 202.31 atmosphere 995.0 14400 > th dose independent rect. 10 11
330 202.37 wind 1.0 14400 > th dose independent rect. 5 1
336 202.38 humidity 60.0 10 > th dose dependent rect. 6 15
337 202.38 humidity 90.0 10 < th dose dependent rect. 8 15
340 202.40 atmosphere 995.0 14400 > th dose independent rect. 15 1
416 202.63 wind 1.0 14400 < th dose dependent rect. 2 1
435 202.72 temperature 15.0 10 > th dose dependent rect. 7 23
449 202.77 temperature 30.0 270 < th dose independent rect. 14 17
480 202.85 wind 9.0 14400 > th dose dependent rect. 20 15
502 202.94 humidity 60.0 1440 < th dose independent rect. 11 1
509 202.95 wind 5.0 4320 > th dose dependent rect. 8 3
513 202.97 radiation 20.0 270 < th dose dependent rect. 12 20
523 203.00 wind 9.0 14400 < th dose independent rect. 20 8
545 203.14 radiation 10.0 270 < th dose dependent sin 2 NA
547 203.15 wind 5.0 4320 > th dose independent rect. 8 2
555 203.17 wind 9.0 43200 < th dose independent rect. 17 1
580 203.23 wind 9.0 43200 > th dose independent rect. 17 1
658 203.51 temperature 15.0 90 > th dose dependent rect. 16 23
663 203.53 temperature 10.0 10 > th dose dependent rect. 21 23
666 203.55 atmosphere 1000.0 1440 > th dose independent rect. 22 1
679 203.56 radiation 10.0 270 < th dose dependent rect. 22 23
704 203.65 humidity 70.0 90 > th dose independent rect. 5 16
717 203.68 temperature 15.0 10 > th dose dependent rect. 17 23
736 203.75 atmosphere 995.0 14400 > th dose independent rect. 17 2
755 203.77 humidity 50.0 270 > th dose dependent rect. 2 16
766 203.80 atmosphere 1000.0 270 > th dose independent rect. 23 23
774 203.82 radiation 1.0 43200 < th dose dependent rect. 19 9
779 203.83 temperature 30.0 90 < th dose dependent rect. 13 20
787 203.85 wind 9.0 14400 > th dose dependent sin 11 NA
827 203.96 temperature 25.0 4320 > th dose dependent rect. 4 4
844 204.02 atmosphere 1000.0 10 > th dose independent rect. 12 22
859 204.05 temperature 25.0 4320 > th dose independent rect. 6 1
878 204.10 precipitation 0.1 43200 > th dose dependent rect. 20 1
929 204.23 temperature 30.0 10 < th dose dependent rect. 1 23
934 204.24 temperature 15.0 30 > th dose dependent rect. 13 23
966 204.33 humidity 60.0 1440 > th dose independent rect. 11 1
991 204.40 atmosphere 1000.0 30 > th dose independent rect. 12 20
992 204.40 temperature 25.0 1440 > th dose dependent rect. 13 1