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Os09g0542200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thioredoxin fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0189) R2 : 0.326
β1 : -1.02 (0.0693) R2dD : 0.329 R2D : 0.273
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.209 (0.0404) R2dN8 : 0.0528 R2N8 : -0.00329
σ : 0.355
deviance : 57.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.61 0.288 11.9 -1.02 0.347 0.275 1.4 -1.46 -0.211 21.1 50 10 -- --
39.61 0.295 11.9 -0.996 0.216 0.388 0.952 -- -0.211 18.3 19.98 18 -- --
41.44 0.3 11.9 -1.04 0.331 0.342 -- -0.521 -0.213 21.1 63.3 9 -- --
41.53 0.3 11.9 -1.01 0.24 0.359 -- -- -0.194 19 21.85 17 -- --
45.92 0.316 11.9 -1.03 -- 0.582 -- -0.516 -0.207 -- 91.65 14 -- --
43.17 0.308 11.9 -1.01 0.486 -- 0.388 -- -0.208 21.9 -- -- -- --
43.7 0.31 11.9 -1.02 0.483 -- -- -- -0.209 22.1 -- -- -- --
44 0.31 11.9 -1.02 -- 0.394 -- -- -0.209 -- 15.69 13 -- --
68.31 0.385 11.9 -- 0.242 0.384 -- -- -0.0918 18.3 22.37 14 -- --
57.79 0.355 11.9 -1.02 -- -- -- -- -0.209 -- -- -- -- --
71.24 0.395 11.9 -- 0.478 -- -- -- -0.0955 22 -- -- -- --
71.29 0.395 11.9 -- -- 0.393 -- -- -0.0966 -- 15.69 13 -- --
85 0.43 11.9 -- -- -- -- -- -0.0959 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.53 atmosphere 1000.0 90 > th dose independent rect. 10 15
2 35.53 atmosphere 1000.0 270 > th dose independent rect. 8 16
4 35.58 atmosphere 995.0 270 > th dose dependent rect. 8 15
5 35.60 atmosphere 1000.0 10 > th dose independent rect. 10 15
6 35.60 humidity 90.0 90 < th dose dependent rect. 22 17
8 35.72 atmosphere 995.0 90 > th dose dependent rect. 10 15
10 35.78 humidity 90.0 270 < th dose dependent rect. 20 17
15 35.83 atmosphere 995.0 10 > th dose dependent rect. 10 17
16 35.84 atmosphere 995.0 10 > th dose dependent rect. 10 15
36 36.06 humidity 80.0 270 > th dose independent rect. 24 8
41 36.10 temperature 30.0 720 < th dose dependent rect. 1 9
43 36.12 humidity 90.0 10 < th dose dependent rect. 22 17
49 36.14 atmosphere 1000.0 10 > th dose independent rect. 10 17
57 36.19 humidity 90.0 90 < th dose dependent sin 4 NA
63 36.25 temperature 25.0 720 < th dose independent rect. 1 9
66 36.25 humidity 90.0 270 < th dose dependent rect. 3 9
75 36.28 humidity 50.0 90 > th dose dependent rect. 1 10
83 36.33 humidity 90.0 270 < th dose dependent sin 7 NA
93 36.37 atmosphere 1015.0 10 < th dose dependent rect. 6 16
99 36.39 atmosphere 995.0 270 > th dose dependent rect. 7 8
103 36.39 atmosphere 1015.0 270 < th dose dependent rect. 13 19
104 36.39 humidity 90.0 10 < th dose dependent rect. 20 20
105 36.40 radiation 30.0 270 < th dose independent rect. 24 9
115 36.42 humidity 90.0 90 < th dose dependent rect. 3 12
121 36.43 humidity 90.0 90 < th dose dependent rect. 5 10
145 36.49 radiation 40.0 90 < th dose independent rect. 12 23
149 36.50 atmosphere 995.0 90 > th dose dependent rect. 9 7
161 36.52 humidity 50.0 270 > th dose dependent sin 7 NA
169 36.53 humidity 90.0 90 < th dose dependent rect. 9 6
173 36.54 temperature 10.0 270 > th dose dependent rect. 24 8
178 36.55 humidity 80.0 270 > th dose independent rect. 24 14
181 36.55 humidity 50.0 270 > th dose dependent rect. 23 10
203 36.60 atmosphere 1015.0 90 < th dose dependent rect. 15 18
205 36.61 humidity 90.0 10 < th dose dependent rect. 9 6
211 36.62 temperature 30.0 270 < th dose independent rect. 9 3
218 36.63 humidity 50.0 90 > th dose dependent sin 5 NA
247 36.68 wind 1.0 90 > th dose independent rect. 1 8
252 36.69 humidity 80.0 270 < th dose independent rect. 24 12
254 36.69 humidity 80.0 90 < th dose independent rect. 23 16
261 36.70 humidity 80.0 90 < th dose independent rect. 1 14
264 36.71 humidity 90.0 10 < th dose dependent rect. 7 8
267 36.72 humidity 80.0 270 < th dose independent rect. 3 9
281 36.74 atmosphere 1015.0 90 < th dose dependent rect. 1 9
293 36.75 radiation 40.0 10 < th dose dependent rect. 12 23
298 36.76 atmosphere 1015.0 10 < th dose dependent rect. 13 21
299 36.76 humidity 50.0 90 > th dose dependent rect. 12 23
320 36.78 humidity 90.0 10 < th dose dependent rect. 3 12
364 36.82 humidity 80.0 90 < th dose independent rect. 9 6
365 36.82 temperature 30.0 270 < th dose independent rect. 8 16
381 36.83 atmosphere 1015.0 10 < th dose dependent rect. 6 14
384 36.84 humidity 80.0 270 < th dose independent sin 6 NA
397 36.85 temperature 10.0 720 > th dose dependent rect. 4 7
412 36.87 humidity 80.0 90 < th dose independent sin 3 NA
429 36.88 atmosphere 1015.0 10 < th dose dependent rect. 15 19
433 36.89 humidity 50.0 1440 > th dose independent rect. 2 9
463 36.91 humidity 90.0 270 < th dose independent rect. 8 16
471 36.91 atmosphere 1015.0 10 < th dose dependent rect. 1 9
484 36.92 radiation 40.0 10 < th dose dependent rect. 1 23
497 36.95 temperature 20.0 720 > th dose independent rect. 22 9
511 36.96 humidity 80.0 270 > th dose independent sin 6 NA
513 36.96 atmosphere 995.0 10 > th dose dependent rect. 9 7
549 36.99 humidity 80.0 10 < th dose independent rect. 9 7
563 37.00 temperature 15.0 10 > th dose independent rect. 10 15
587 37.01 temperature 10.0 720 > th dose dependent sin 5 NA
599 37.02 humidity 50.0 1440 > th dose independent rect. 4 7
606 37.02 radiation 40.0 270 < th dose dependent rect. 24 9
612 37.03 atmosphere 1000.0 270 > th dose independent rect. 8 4
619 37.03 temperature 30.0 720 < th dose dependent sin 6 NA
625 37.03 atmosphere 995.0 90 > th dose dependent rect. 9 21
659 37.06 temperature 10.0 10 > th dose dependent rect. 1 9
669 37.06 atmosphere 1015.0 90 < th dose dependent rect. 17 16
683 37.07 wind 1.0 90 > th dose independent rect. 10 15
711 37.09 radiation 30.0 30 < th dose independent rect. 3 8
757 37.11 temperature 20.0 720 > th dose dependent rect. 1 12
767 37.12 precipitation 0.1 270 < th dose independent rect. 8 16
778 37.12 precipitation 0.1 270 < th dose dependent rect. 8 16
782 37.13 wind 9.0 270 < th dose independent rect. 24 8
783 37.13 temperature 10.0 270 > th dose independent rect. 24 8
788 37.13 atmosphere 995.0 270 > th dose independent rect. 24 8
789 37.13 atmosphere 1015.0 270 < th dose independent rect. 24 8
794 37.13 temperature 10.0 270 > th dose independent rect. 8 16
802 37.13 temperature 10.0 270 > th dose dependent rect. 5 15
820 37.14 temperature 15.0 10 > th dose dependent rect. 6 16
855 37.17 atmosphere 1000.0 90 > th dose independent rect. 9 6
901 37.18 humidity 50.0 10 > th dose dependent rect. 1 23
907 37.19 precipitation 0.1 90 < th dose independent rect. 10 15
911 37.19 atmosphere 995.0 90 > th dose dependent sin 20 NA
917 37.19 precipitation 0.1 90 < th dose dependent rect. 10 15
922 37.19 humidity 50.0 90 > th dose dependent rect. 23 23
933 37.20 humidity 50.0 90 > th dose dependent rect. 3 8
940 37.21 humidity 80.0 270 < th dose independent rect. 9 3
965 37.21 temperature 10.0 720 > th dose dependent rect. 23 16
979 37.22 wind 1.0 90 > th dose independent rect. 9 18
982 37.22 atmosphere 995.0 270 > th dose dependent sin 22 NA