BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0542200 Os09g0542200|AK064887
         (237 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20225.1  | chr1:7007966-7009318 REVERSE LENGTH=234            202   1e-52
AT1G76020.1  | chr1:28532243-28533542 REVERSE LENGTH=226          169   1e-42

>AT1G20225.1 | chr1:7007966-7009318 REVERSE LENGTH=234
          Length = 233

 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/209 (48%), Positives = 135/209 (64%), Gaps = 3/209 (1%)

Query: 30  HAQASVPPRYDGFAYGDAATAAWKDTILVEAFLDPLCPDSRDAWAPLRLAVDRYAPRVSL 89
            AQ   P R DGF Y        +DTIL+EA++DP+CPD RDAW PL+LA+D Y  RV+L
Sbjct: 19  QAQLIPPARRDGFLYPPGRKID-RDTILIEAYIDPVCPDCRDAWEPLKLAIDHYGSRVAL 77

Query: 90  IVHPFPLPYHTNSFLACRALYIANKLNSSSTYPLLELFFKSQGKFYNAATSSLSSTVISG 149
           ++H  PLP+H N+F+A RAL+I + LN+++T+ LLE  FK Q  FYN+ T  +S   +  
Sbjct: 78  VLHLIPLPFHDNAFVASRALHIVDTLNANATFNLLEGIFKHQTLFYNSQTQLMSRPAVVE 137

Query: 150 EMSKLAARVVGNSV-SEFQSGFSDIRTDLAARVSFKYGCTRGVAGAPFFFVNGFLQPGGG 208
           E+ KL    +GNS  S  +SGFS+ ++DLA RVSFKY  +RGV+  P F+VNGF  PG G
Sbjct: 138 ELIKLGTVTLGNSYHSPLKSGFSNSKSDLATRVSFKYSVSRGVSATPTFYVNGFELPGAG 197

Query: 209 SPIDYSTWVSILDPLAG-QHGDRLEMFTS 236
           SP DY  W   +DPL   Q  D  + F S
Sbjct: 198 SPKDYEGWRDTIDPLVKPQEVDIRDTFLS 226



>AT1G76020.1 | chr1:28532243-28533542 REVERSE LENGTH=226
          Length = 225

 Score =  169 bits (429), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 93/200 (46%), Positives = 127/200 (63%), Gaps = 2/200 (1%)

Query: 29  LHAQASVPPRYDGFAYGDAATAAWKDTILVEAFLDPLCPDSRDAWAPLRLAVDRYAPRVS 88
           + AQ   P R DGF Y         DTIL+EA+ DP+CPDSRD+W PL+ A+  Y  RV+
Sbjct: 17  VQAQLVPPVRQDGFVYPPGHRFD-PDTILIEAYFDPVCPDSRDSWPPLKQALHHYGSRVA 75

Query: 89  LIVHPFPLPYHTNSFLACRALYIANKLNSSSTYPLLELFFKSQGKFYNAATSSLSSTVIS 148
           L++H  PLPYH N+++  RAL+I N +++++T+ LLE FFK Q  FYNA T  LS   + 
Sbjct: 76  LLLHLLPLPYHDNAYVTSRALHIVNTVHANATFSLLEGFFKHQSLFYNAQTQLLSRPAVV 135

Query: 149 GEMSKLAARVVGNSV-SEFQSGFSDIRTDLAARVSFKYGCTRGVAGAPFFFVNGFLQPGG 207
            ++ +L    +GNS  S  +SGFSD ++D A RVSFKY  +RGV G P F+VNGF+    
Sbjct: 136 EKIVELGTVSLGNSYQSVLKSGFSDKKSDRATRVSFKYSASRGVYGTPTFYVNGFVLSDA 195

Query: 208 GSPIDYSTWVSILDPLAGQH 227
            SP ++  W  I+DPL   H
Sbjct: 196 ASPSNFGGWKKIIDPLVQAH 215



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,756,953
Number of extensions: 179120
Number of successful extensions: 387
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 2
Length of query: 237
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 141
Effective length of database: 8,474,633
Effective search space: 1194923253
Effective search space used: 1194923253
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)