BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0540900 Os09g0540900|Os09g0540900
         (595 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0540900  RNA-binding protein Lupus La domain containing...   639   0.0  
Os03g0859300  RNA-binding protein Lupus La domain containing...    67   5e-11

>Os09g0540900 RNA-binding protein Lupus La domain containing protein
          Length = 595

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/556 (61%), Positives = 340/556 (61%)

Query: 40  EGDRAPPPQGNRRDPAGSAEGADPGNAAARKTAWNXXXXXXXXXXXXXXXXXXXXXXXXX 99
           EGDRAPPPQGNRRDPAGSAEGADPGNAAARKTAWN                         
Sbjct: 40  EGDRAPPPQGNRRDPAGSAEGADPGNAAARKTAWNVPAPPLAAAAAAGAGVGVPGGGIMG 99

Query: 100 XXXXXXXXLAESAAARGSWPXXXXXXXXXXXXXXXXPSASEDLIVPSVQPHPVAXXXXXX 159
                   LAESAAARGSWP                PSASEDLIVPSVQPHPVA      
Sbjct: 100 GGPGSWPALAESAAARGSWPKSASSDSLKSLSDGSAPSASEDLIVPSVQPHPVANPISGG 159

Query: 160 XXXXXXXXXXXXXXXXXXEQNGNTDQSNPVRHSSGGHCAXXXXXXXXXXXXXXXXXXXXX 219
                             EQNGNTDQSNPVRHSSGGHCA                     
Sbjct: 160 SNPTSSPPPPNATVVVTSEQNGNTDQSNPVRHSSGGHCAGSNSSRDGNTSDGGDGSWNDG 219

Query: 220 XXXXXXXXXXXXXXXXXXXXXXXXXXXXIIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 279
                                       IIH                             
Sbjct: 220 GLGSGSGSNSSYGHGNSTNGAGGANMNNIIHSSGTSSSANDSSRRISGNNNWNNNGRSAG 279

Query: 280 XXHNAAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRNRRDHERGGSFSPRNYPRHTXX 339
             HNAAGS                            HRNRRDHERGGSFSPRNYPRHT  
Sbjct: 280 SNHNAAGSGDGSNRNLWNNNGRNGGGSSNGFVGRGGHRNRRDHERGGSFSPRNYPRHTPM 339

Query: 340 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPYVPHFAYPADVQGYPFYLPPMEQFQ 399
                                            VPYVPHFAYPADVQGYPFYLPPMEQFQ
Sbjct: 340 PPQQQQPGIYQPGPFPRPPPPPPPGHFMVPQPFVPYVPHFAYPADVQGYPFYLPPMEQFQ 399

Query: 400 NMHLVRPQMQPLWVPQDQQNLQEDIRTQIEFYFSTNNLCHDTFLRRQMDDQGWVHIDVIT 459
           NMHLVRPQMQPLWVPQDQQNLQEDIRTQIEFYFSTNNLCHDTFLRRQMDDQGWVHIDVIT
Sbjct: 400 NMHLVRPQMQPLWVPQDQQNLQEDIRTQIEFYFSTNNLCHDTFLRRQMDDQGWVHIDVIT 459

Query: 460 KFNREAIIVLVLCLQHPVLMFPSFFWQIVLRLPMRRFTNLVDTNYILDAVRGSELVEVQM 519
           KFNREAIIVLVLCLQHPVLMFPSFFWQIVLRLPMRRFTNLVDTNYILDAVRGSELVEVQM
Sbjct: 460 KFNREAIIVLVLCLQHPVLMFPSFFWQIVLRLPMRRFTNLVDTNYILDAVRGSELVEVQM 519

Query: 520 MYLYSQLTCICILLQLHIYREIPSEGAIIGQNGYSFKPPSCKSGVGNKQLAWPTRSERKD 579
           MYLYSQLTCICILLQLHIYREIPSEGAIIGQNGYSFKPPSCKSGVGNKQLAWPTRSERKD
Sbjct: 520 MYLYSQLTCICILLQLHIYREIPSEGAIIGQNGYSFKPPSCKSGVGNKQLAWPTRSERKD 579

Query: 580 SNTCLQCEATTLLVNG 595
           SNTCLQCEATTLLVNG
Sbjct: 580 SNTCLQCEATTLLVNG 595



>Os03g0859300 RNA-binding protein Lupus La domain containing protein
          Length = 383

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 35/48 (72%)

Query: 416 DQQNLQEDIRTQIEFYFSTNNLCHDTFLRRQMDDQGWVHIDVITKFNR 463
           D Q  + ++  QIEFYFS +NLC D FLRR MDDQGWV+I +I  FN+
Sbjct: 231 DPQQHRANLLKQIEFYFSKDNLCTDVFLRRNMDDQGWVNIALIAGFNK 278



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,205,668
Number of extensions: 429872
Number of successful extensions: 952
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 948
Number of HSP's successfully gapped: 3
Length of query: 595
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 489
Effective length of database: 11,501,117
Effective search space: 5624046213
Effective search space used: 5624046213
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)