Os09g0540900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding protein Lupus La domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0540900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : RNA-binding protein Lupus La domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.24 | 0.217 | 8.69 | 0.0194 | 0.24 | -0.662 | -0.0152 | -1.18 | 0.12 | 12.4 | 22.4 | 1441 | -- | -- |
| 22.22 | 0.221 | 8.71 | -0.07 | 0.164 | -0.362 | -0.0644 | -- | 0.0951 | 11.8 | 24.82 | 1450 | -- | -- |
| 21.24 | 0.215 | 8.69 | 0.0194 | 0.241 | -0.661 | -- | -1.18 | 0.12 | 12.4 | 22.4 | 1436 | -- | -- |
| 22.16 | 0.221 | 8.71 | -0.0732 | 0.16 | -0.365 | -- | -- | 0.0907 | 11.8 | 25.11 | 1850 | -- | -- |
| 24.25 | 0.231 | 8.71 | -0.0271 | -- | -0.571 | -- | -0.614 | 0.116 | -- | 22.4 | 1436 | -- | -- |
| 24.14 | 0.23 | 8.7 | 0.0139 | 0.231 | -- | -0.0446 | -- | 0.163 | 12.3 | -- | -- | -- | -- |
| 24.15 | 0.23 | 8.7 | 0.0122 | 0.231 | -- | -- | -- | 0.163 | 12.3 | -- | -- | -- | -- |
| 23.57 | 0.227 | 8.72 | -0.102 | -- | -0.474 | -- | -- | 0.0676 | -- | 25.11 | 1850 | -- | -- |
| 22.29 | 0.221 | 8.71 | -- | 0.166 | -0.338 | -- | -- | 0.104 | 11.9 | 25.11 | 1850 | -- | -- |
| 27.51 | 0.245 | 8.7 | 0.00456 | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
| 24.16 | 0.23 | 8.7 | -- | 0.231 | -- | -- | -- | 0.162 | 12.3 | -- | -- | -- | -- |
| 23.83 | 0.228 | 8.72 | -- | -- | -0.442 | -- | -- | 0.0844 | -- | 25.11 | 1850 | -- | -- |
| 27.51 | 0.245 | 8.7 | -- | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.95 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 2 |
| 4 | 20.32 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 5 | 20.32 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 14 | 20.53 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 20 | 20.61 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 21 |
| 22 | 20.62 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 20 |
| 31 | 20.66 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 20 |
| 32 | 20.66 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 34 | 20.69 | wind | 1 | 14400 | > th | dose independent | sin | 14 | NA |
| 37 | 20.70 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 20 |
| 38 | 20.70 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 22 |
| 41 | 20.71 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 22 |
| 47 | 20.72 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 22 |
| 48 | 20.72 | wind | 1 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 49 | 20.72 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 60 | 20.74 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 21 |
| 62 | 20.75 | wind | 1 | 14400 | < th | dose independent | sin | 14 | NA |
| 66 | 20.75 | wind | 1 | 14400 | < th | dose independent | rect. | 7 | 22 |
| 71 | 20.76 | wind | 1 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 78 | 20.76 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 20 |
| 90 | 20.79 | wind | 1 | 14400 | > th | dose independent | no | NA | NA |
| 100 | 20.80 | wind | 1 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 101 | 20.80 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 18 |
| 108 | 20.80 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 122 | 20.82 | wind | 1 | 14400 | < th | dose independent | rect. | 16 | 22 |
| 133 | 20.83 | wind | 1 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 142 | 20.84 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 22 |
| 147 | 20.84 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 22 |
| 148 | 20.85 | wind | 1 | 14400 | < th | dose independent | no | NA | NA |
| 164 | 20.85 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 165 | 20.86 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 189 | 20.88 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 4 | 10 |
| 190 | 20.88 | wind | 1 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 203 | 20.88 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 18 |
| 205 | 20.89 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 209 | 20.89 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 225 | 20.90 | wind | 1 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 229 | 20.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 244 | 20.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 245 | 20.92 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 4 | 5 |
| 246 | 20.92 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 282 | 20.94 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 302 | 20.96 | wind | 1 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 310 | 20.96 | wind | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 311 | 20.96 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 332 | 20.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 334 | 20.98 | wind | 1 | 14400 | < th | dose independent | rect. | 15 | 14 |
| 353 | 20.99 | wind | 1 | 14400 | > th | dose independent | rect. | 15 | 14 |
| 364 | 20.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 365 | 20.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 368 | 21.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 429 | 21.02 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 441 | 21.03 | wind | 1 | 14400 | < th | dose independent | rect. | 12 | 15 |
| 502 | 21.05 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 23 |
| 535 | 21.07 | wind | 1 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 538 | 21.07 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 568 | 21.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 7 |
| 569 | 21.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 583 | 21.09 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 694 | 21.12 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 754 | 21.14 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 22 |
| 757 | 21.15 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 758 | 21.15 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 801 | 21.16 | humidity | 50 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 824 | 21.16 | wind | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 836 | 21.16 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 16 |
| 843 | 21.16 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 19 |
| 855 | 21.16 | temperature | 10 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 895 | 21.17 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 960 | 21.19 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 989 | 21.19 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 23 |