BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0540900 Os09g0540900|Os09g0540900
         (595 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66100.1  | chr5:26427639-26429772 FORWARD LENGTH=454           67   3e-11

>AT5G66100.1 | chr5:26427639-26429772 FORWARD LENGTH=454
          Length = 453

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 65/147 (44%), Gaps = 32/147 (21%)

Query: 401 MHLVRP-QMQPLWVPQDQQNLQEDIRTQIEFYFSTNNLCHDTFLRRQMDDQGWVHIDVIT 459
           M LV P  +QP++       L   I TQ+E+YFS +NL  D  LR QM+D+GWV + VI 
Sbjct: 315 MGLVGPFPLQPMYFRNFDAILYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIA 374

Query: 460 KFNREAIIVLVLCLQHPVLMFPSFFWQIVLRLPMRRFTNLVDTNYILDAVRGSELVEVQM 519
            F R A                               TN + T  IL+A+R SE+VE+Q 
Sbjct: 375 AFRRLA-----------------------------ELTNNIQT--ILEALRSSEVVEIQG 403

Query: 520 MYLYSQLTCICILLQLHIYREIPSEGA 546
             L  +      LL     R  P+ GA
Sbjct: 404 ETLRRRGDWDKYLLPREPSRSGPAAGA 430



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,971,877
Number of extensions: 262208
Number of successful extensions: 427
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 491
Effective length of database: 8,255,305
Effective search space: 4053354755
Effective search space used: 4053354755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)