BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0534000 Os09g0534000|AK100026
         (457 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0534000  Conserved hypothetical protein                      613   e-175
Os12g0148700  Conserved hypothetical protein                       96   4e-20

>Os09g0534000 Conserved hypothetical protein
          Length = 457

 Score =  613 bits (1580), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 316/407 (77%), Positives = 316/407 (77%)

Query: 51  GWSLKQHEDDTAASPTFSDSSTITVVDEAVKPDSEETSSHRXXXXXXXXXXXXXXXXXXX 110
           GWSLKQHEDDTAASPTFSDSSTITVVDEAVKPDSEETSSHR                   
Sbjct: 51  GWSLKQHEDDTAASPTFSDSSTITVVDEAVKPDSEETSSHRPPPPPEEEDEEDAAEAAVE 110

Query: 111 XXXXXXXXXRDAKLNXXXXXXXXXXXXXXGILESLAMLVIKAVVFQVSALISCLTFPIRL 170
                    RDAKLN              GILESLAMLVIKAVVFQVSALISCLTFPIRL
Sbjct: 111 GEVEGEVEARDAKLNPAPAPAPTPTPPPPGILESLAMLVIKAVVFQVSALISCLTFPIRL 170

Query: 171 LQWWFLLVTDPLGLVRRARGWXXXXXXXXXXXXXXXXXXXXXXXXMVARLAWGSLWAVYV 230
           LQWWFLLVTDPLGLVRRARGW                        MVARLAWGSLWAVYV
Sbjct: 171 LQWWFLLVTDPLGLVRRARGWALEVAGHATGAAAARLGGGEGVGRMVARLAWGSLWAVYV 230

Query: 231 CVVLCSILVMAFXXXXXXXXXXXEEPIQVTETLNFDYTKPSPVAFVPVQRLVPPNQRMQL 290
           CVVLCSILVMAF           EEPIQVTETLNFDYTKPSPVAFVPVQRLVPPNQRMQL
Sbjct: 231 CVVLCSILVMAFLGGGLLVGKVVEEPIQVTETLNFDYTKPSPVAFVPVQRLVPPNQRMQL 290

Query: 291 EVFLTLPESDYNRRLGVFQVRAEFLSADGKVISTSSQPCMLKFKSAHMHFIETFXXXXXX 350
           EVFLTLPESDYNRRLGVFQVRAEFLSADGKVISTSSQPCMLKFKSAHMHFIETF      
Sbjct: 291 EVFLTLPESDYNRRLGVFQVRAEFLSADGKVISTSSQPCMLKFKSAHMHFIETFLRSVSL 350

Query: 351 XXXXXXXXQVIRLKMRGITEASEPVMGIRIILEQRAEFSPGAGIPEIYAASLKLEAELPL 410
                   QVIRLKMRGITEASEPVMGIRIILEQRAEFSPGAGIPEIYAASLKLEAELPL
Sbjct: 351 LSGYSSESQVIRLKMRGITEASEPVMGIRIILEQRAEFSPGAGIPEIYAASLKLEAELPL 410

Query: 411 LKRILWNWRWTLFVWSSMGFFVFELLLALICCRPCIFPRSGHNAATP 457
           LKRILWNWRWTLFVWSSMGFFVFELLLALICCRPCIFPRSGHNAATP
Sbjct: 411 LKRILWNWRWTLFVWSSMGFFVFELLLALICCRPCIFPRSGHNAATP 457



>Os12g0148700 Conserved hypothetical protein
          Length = 409

 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 10/233 (4%)

Query: 216 MVARLAWGSLWAVYVCVVLCSILVMAFXXXXXXXXXXXEEPIQVTETLNFDYTKPSP--- 272
           ++ R A G L A     VL +  V++             EP+     L FDYT+  P   
Sbjct: 97  LLRRAATGLLAAACTFAVLAAAFVVSLVLGFALVRHWVAEPVTARHPLYFDYTEAQPSAA 156

Query: 273 -VAFVPVQRLVPPNQRMQLEVFLTLPESDYNRRLGVFQVRAEFLSADGKVISTSSQPCML 331
                     VP    +++ + L LP+S +NR +GVFQ+++E +SA G  I++++QP ++
Sbjct: 157 VALGGGAAAAVPAGHAVRVSMALLLPDSYHNRHIGVFQIKSEAISASGITIASTTQPYLI 216

Query: 332 KFKSAHMHFIETFXXXXXXXXXXXXXXQVIRLKMRGITEA---SEPVMGIRIILEQRAEF 388
           K+KS+ +  I+T               Q   LK+    E     +  + IR++L+ RA  
Sbjct: 217 KYKSSPVRLIQTALLCVPLTMGIRSESQDANLKLLHYREGHGRHKRTVLIRVMLQPRAM- 275

Query: 389 SPGAGIPEIYAASLKLEAELPLLKRILWNWRWTLFVWSSMGFFVFELLLALIC 441
                +P++Y A + ++  LP  K ++   +WTL VW S+  +VF L+LA+IC
Sbjct: 276 --TVHLPQVYQAEIVVQTTLPWTKELVRALKWTLCVWVSLCVYVFILVLAMIC 326



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,992,886
Number of extensions: 311918
Number of successful extensions: 790
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 786
Number of HSP's successfully gapped: 2
Length of query: 457
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 353
Effective length of database: 11,605,545
Effective search space: 4096757385
Effective search space used: 4096757385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 158 (65.5 bits)