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Os09g0534000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0133) R2 : 0.62
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.738 (0.0325) R2dC : 0.432 R2C : 0.371
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.424 (0.0279) R2dN8 : 0.249 R2N8 : 0.188
σ : 0.25
deviance : 28.49
__
_____
C
peak time of C : 9.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.35 0.232 10 0.198 0.74 0.352 0.00358 -0.508 -0.32 9.52 19.5 2891 -- --
24.63 0.231 10 0.208 0.737 0.509 0.0338 -- -0.323 9.6 18.7 5851 -- --
24.35 0.23 10 0.198 0.74 0.352 -- -0.508 -0.32 9.52 19.5 2890 -- --
24.21 0.229 10 0.121 0.75 0.487 -- -- -0.346 9.56 18.5 3046 -- --
56.13 0.349 10 0.27 -- 0.393 -- -0.349 -0.275 -- 20.57 2248 -- --
28.2 0.249 10 -0.104 0.738 -- 0.0408 -- -0.435 9.59 -- -- -- --
28.21 0.249 10 -0.103 0.738 -- -- -- -0.435 9.59 -- -- -- --
55.72 0.348 10 0.303 -- 0.613 -- -- -0.259 -- 18.9 2285 -- --
24.6 0.231 10 -- 0.743 0.486 -- -- -0.359 9.54 18.5 3011 -- --
60.4 0.363 10.1 -0.109 -- -- -- -- -0.433 -- -- -- -- --
28.49 0.25 10 -- 0.738 -- -- -- -0.424 9.6 -- -- -- --
55.47 0.347 10 -- -- 0.537 -- -- -0.352 -- 18.8 2212 -- --
60.71 0.364 10.1 -- -- -- -- -- -0.421 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.14 humidity 50 43200 < th dose independent rect. 7 2
5 23.22 humidity 60 43200 < th dose dependent rect. 7 2
9 23.25 radiation 20 4320 < th dose independent rect. 17 13
11 23.28 humidity 50 43200 > th dose independent rect. 7 2
12 23.28 humidity 50 43200 > th dose independent rect. 2 7
13 23.30 humidity 50 43200 > th dose independent rect. 4 5
15 23.30 humidity 60 43200 < th dose dependent rect. 22 11
29 23.33 humidity 50 43200 > th dose independent rect. 23 10
39 23.42 atmosphere 1005 90 > th dose dependent rect. 23 9
41 23.43 temperature 20 90 > th dose independent rect. 9 19
51 23.57 radiation 20 1440 < th dose independent rect. 11 2
60 23.63 radiation 20 4320 < th dose independent rect. 17 7
83 23.68 humidity 90 14400 > th dose dependent rect. 5 1
90 23.72 radiation 20 4320 < th dose independent rect. 17 3
95 23.77 radiation 20 4320 < th dose independent rect. 17 1
97 23.78 radiation 20 4320 < th dose independent rect. 17 5
106 23.80 radiation 10 4320 > th dose dependent rect. 17 14
108 23.81 temperature 20 90 > th dose independent rect. 16 12
138 23.92 radiation 20 4320 < th dose independent rect. 2 5
143 23.95 temperature 20 90 > th dose independent rect. 11 17
144 23.95 radiation 10 4320 > th dose dependent rect. 6 1
148 23.96 radiation 20 4320 < th dose independent rect. 21 10
149 23.96 radiation 20 4320 < th dose independent rect. 19 12
162 23.97 radiation 40 4320 < th dose independent rect. 15 17
170 23.98 radiation 20 4320 < th dose independent rect. 23 8
209 24.00 humidity 50 43200 < th dose independent sin 9 NA
210 24.01 humidity 50 43200 > th dose independent sin 10 NA
212 24.01 humidity 70 43200 > th dose independent rect. 2 13
218 24.03 wind 1 43200 > th dose independent rect. 24 1
219 24.03 radiation 20 4320 < th dose independent rect. 6 1
253 24.06 humidity 50 43200 < th dose dependent sin 10 NA
254 24.07 humidity 70 43200 > th dose independent sin 3 NA
262 24.08 temperature 20 1440 < th dose independent rect. 5 1
266 24.08 humidity 70 43200 < th dose independent rect. 24 15
272 24.09 temperature 20 4320 < th dose independent rect. 18 1
273 24.09 temperature 20 14400 < th dose independent rect. 21 1
282 24.09 humidity 50 43200 > th dose independent rect. 13 21
284 24.09 humidity 70 43200 > th dose dependent rect. 20 2
322 24.12 temperature 20 14400 > th dose independent rect. 21 1
352 24.13 atmosphere 1010 1440 > th dose independent rect. 9 1
375 24.14 humidity 70 43200 < th dose independent sin 4 NA
376 24.14 wind 1 43200 > th dose independent rect. 2 1
379 24.14 temperature 20 4320 > th dose independent rect. 18 5
392 24.14 humidity 60 43200 > th dose dependent rect. 18 5
396 24.15 temperature 20 4320 < th dose independent rect. 18 5
401 24.15 humidity 70 43200 > th dose independent rect. 9 17
422 24.16 temperature 20 4320 < th dose independent rect. 17 7
438 24.16 humidity 70 43200 > th dose independent rect. 5 20
448 24.16 humidity 70 43200 > th dose independent rect. 9 22
463 24.16 atmosphere 1005 30 > th dose dependent rect. 23 12
467 24.17 temperature 20 1440 > th dose independent rect. 6 1
468 24.17 temperature 20 4320 > th dose independent rect. 18 1
470 24.17 humidity 90 14400 < th dose independent rect. 23 2
497 24.17 humidity 50 43200 > th dose independent rect. 21 19
510 24.17 humidity 50 43200 < th dose independent rect. 13 21
532 24.17 humidity 60 43200 < th dose dependent sin 7 NA
536 24.18 humidity 70 43200 > th dose independent no NA NA
537 24.18 humidity 50 43200 > th dose independent rect. 14 1
545 24.18 humidity 50 43200 > th dose independent rect. 4 12
592 24.18 wind 1 43200 < th dose dependent rect. 10 16
656 24.19 wind 1 43200 < th dose dependent rect. 8 18
657 24.19 humidity 50 43200 > th dose dependent rect. 8 19
658 24.19 humidity 50 43200 < th dose dependent rect. 17 19
663 24.20 humidity 70 43200 < th dose independent rect. 11 1
700 24.20 humidity 70 43200 < th dose independent rect. 9 20
732 24.20 humidity 60 43200 < th dose dependent rect. 20 19
736 24.21 humidity 50 43200 > th dose independent no NA NA
761 24.21 humidity 70 43200 < th dose independent rect. 10 16
772 24.21 humidity 50 43200 > th dose independent rect. 3 19
803 24.21 humidity 50 43200 > th dose independent rect. 23 23
825 24.21 humidity 50 43200 > th dose dependent rect. 11 15
826 24.21 humidity 90 14400 > th dose dependent rect. 24 15
836 24.22 humidity 70 43200 < th dose independent no NA NA
837 24.22 humidity 70 43200 > th dose independent rect. 10 2
839 24.22 humidity 80 43200 < th dose independent rect. 5 4
842 24.22 temperature 20 90 > th dose independent rect. 20 8
881 24.22 humidity 70 43200 < th dose independent rect. 4 21
915 24.22 humidity 50 43200 < th dose independent rect. 16 23
926 24.22 humidity 60 43200 < th dose dependent rect. 2 13
955 24.23 wind 1 43200 > th dose independent rect. 16 10
960 24.23 wind 1 43200 > th dose independent rect. 14 12