BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0532200 Os09g0532200|Os09g0532200
         (218 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0532200  Harpin-induced 1 domain containing protein          231   2e-61
Os05g0367900  Harpin-induced 1 domain containing protein          108   4e-24

>Os09g0532200 Harpin-induced 1 domain containing protein
          Length = 218

 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 126/173 (72%)

Query: 46  YRPVMPQASVPRAAVYRXXXXXXXXXXXXXXXXVQFTLVLHNPSDRASLLYDGLVAYASY 105
           YRPVMPQASVPRAAVYR                VQFTLVLHNPSDRASLLYDGLVAYASY
Sbjct: 46  YRPVMPQASVPRAAVYRLALANASSSAHALAASVQFTLVLHNPSDRASLLYDGLVAYASY 105

Query: 106 RGEXXXXXXXXXXXXQDRGADVAMSPLLGGAAVPVSPDXXXXXXXXXXXXXVQLRLVVMG 165
           RGE            QDRGADVAMSPLLGGAAVPVSPD             VQLRLVVMG
Sbjct: 106 RGEPVMPPAPLPPVAQDRGADVAMSPLLGGAAVPVSPDAARALAADCAARRVQLRLVVMG 165

Query: 166 RVKYRSGPFRSGWRDLYVRCNVVVGLSTEAAVAXXXXXXDVPLLEYPRCAVDA 218
           RVKYRSGPFRSGWRDLYVRCNVVVGLSTEAAVA      DVPLLEYPRCAVDA
Sbjct: 166 RVKYRSGPFRSGWRDLYVRCNVVVGLSTEAAVAGGGGGGDVPLLEYPRCAVDA 218



>Os05g0367900 Harpin-induced 1 domain containing protein
          Length = 260

 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 80  QFTLVLHNPSDRASLLYDGLVAYASYRGEXXXXXXXXXXXXQDRGADVAMSPLLGGAA-- 137
           Q TLV+ NP++R++  YD L AY +YRGE            QD  + VA++P+LG  A  
Sbjct: 119 QLTLVIRNPNERSAARYDRLAAYVAYRGEPITAPAPMPPLVQDADSAVAVAPVLGAGAAA 178

Query: 138 --VPVSPDXXXXXXXXXXXXXVQLRLVVMGRVKYRSGPFRSGWRDLYVRCNVVVGLSTEA 195
             VPVSPD             V LR+VV+GRV++ SGPFRSGW  +Y RC+++VG+  ++
Sbjct: 179 PPVPVSPDTAAALATDVSYGVVALRVVVLGRVRFVSGPFRSGWHSMYARCDLLVGVR-KS 237

Query: 196 AVAXXXXXXDVPLLEYPRCAVD 217
                    + PLL  P CAVD
Sbjct: 238 GGGGAGGGPEAPLLGNPTCAVD 259



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,297,739
Number of extensions: 117188
Number of successful extensions: 112
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 2
Length of query: 218
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 121
Effective length of database: 11,971,043
Effective search space: 1448496203
Effective search space used: 1448496203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)