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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0532200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Harpin-induced 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.5 (0.0491) R2 : 0.0193
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.31 (0.103) R2dN8 : 0.0249 R2N8 : 0.0193
σ : 0.925
deviance : 392.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
371.2 0.905 3.42 0.54 0.594 -1.15 -0.796 3.07 -0.0976 13.4 24.5 12 -- --
374.81 0.909 3.46 0.153 0.557 -0.898 -0.348 -- -0.19 13.3 23.7 12 -- --
373.4 0.9 3.44 0.421 0.596 -1.13 -- 2.48 -0.118 13.5 24.44 12 -- --
375.22 0.902 3.46 0.149 0.567 -0.928 -- -- -0.186 13.4 23.7 12 -- --
388.06 0.917 3.45 0.336 -- -0.564 -- 2.22 -0.187 -- 24.6 12 -- --
387.57 0.923 3.49 0.00853 0.254 -- -0.514 -- -0.307 11.6 -- -- -- --
388.69 0.923 3.49 -0.0128 0.257 -- -- -- -0.309 11.4 -- -- -- --
388.43 0.918 3.49 0.0393 -- -0.431 -- -- -0.284 -- 25.18 12 -- --
375.79 0.903 3.47 -- 0.55 -0.886 -- -- -0.206 13.4 23.7 12 -- --
392.82 0.926 3.5 -0.0194 -- -- -- -- -0.312 -- -- -- -- --
388.7 0.922 3.49 -- 0.257 -- -- -- -0.308 11.4 -- -- -- --
388.47 0.918 3.49 -- -- -0.426 -- -- -0.289 -- 25.2 12 -- --
392.83 0.925 3.5 -- -- -- -- -- -0.31 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 358.98 radiation 1 270 < th dose independent rect. 8 2
2 358.98 radiation 1 270 < th dose dependent rect. 8 2
7 364.56 wind 1 10 < th dose dependent rect. 1 1
9 365.17 wind 7 1440 > th dose dependent rect. 1 2
10 365.18 wind 7 1440 > th dose independent rect. 1 2
20 365.44 wind 1 10 < th dose dependent rect. 23 4
25 365.65 wind 3 10 > th dose independent rect. 9 10
31 365.77 wind 1 10 < th dose dependent rect. 15 12
37 365.86 radiation 30 10 < th dose independent rect. 6 8
51 366.50 wind 3 10 < th dose dependent rect. 6 13
52 366.58 wind 3 10 < th dose independent rect. 6 13
59 367.02 temperature 25 30 > th dose dependent rect. 17 22
86 368.13 radiation 30 10 < th dose independent rect. 19 19
89 368.26 humidity 70 4320 > th dose independent rect. 20 2
90 368.27 wind 3 10 > th dose independent rect. 5 14
91 368.29 humidity 70 4320 > th dose independent rect. 20 5
93 368.31 humidity 50 4320 > th dose independent rect. 16 1
104 368.59 radiation 40 30 > th dose dependent rect. 11 1
106 368.70 humidity 70 4320 > th dose independent rect. 21 8
108 368.79 temperature 20 720 < th dose independent rect. 4 1
109 368.82 temperature 25 90 > th dose independent rect. 6 8
120 369.10 radiation 10 4320 > th dose dependent rect. 16 1
121 369.17 wind 1 10 < th dose dependent sin 16 NA
122 369.18 humidity 70 4320 > th dose independent rect. 20 10
123 369.19 wind 3 10 < th dose independent sin 22 NA
141 369.51 wind 3 10 > th dose independent sin 22 NA
143 369.53 wind 1 10 < th dose independent rect. 23 3
144 369.53 wind 1 10 < th dose independent rect. 21 5
156 369.65 wind 1 10 < th dose independent rect. 1 1
168 369.81 wind 1 10 < th dose independent rect. 15 11
174 369.86 wind 9 4320 > th dose dependent rect. 14 1
181 369.94 wind 9 4320 > th dose independent rect. 14 1
184 369.97 wind 3 10 > th dose independent rect. 9 14
210 370.08 radiation 40 4320 < th dose dependent rect. 16 1
224 370.22 radiation 40 30 > th dose independent rect. 11 1
230 370.31 temperature 25 30 > th dose independent rect. 17 22
232 370.37 radiation 30 10 < th dose independent rect. 3 11
233 370.37 radiation 1 4320 < th dose dependent rect. 1 4
239 370.52 humidity 50 10 > th dose independent sin 7 NA
241 370.53 temperature 20 720 > th dose dependent rect. 2 9
244 370.57 wind 9 10 > th dose dependent rect. 15 20
246 370.59 radiation 1 4320 < th dose dependent rect. 4 1
251 370.63 temperature 20 30 > th dose dependent rect. 6 16
256 370.69 wind 1 4320 < th dose dependent rect. 5 1
262 370.73 humidity 90 4320 < th dose independent rect. 5 2
270 370.78 temperature 20 720 > th dose independent rect. 3 2
289 370.99 temperature 20 4320 < th dose independent rect. 21 1
292 371.00 radiation 20 43200 > th dose independent rect. 16 16
297 371.04 radiation 20 43200 > th dose independent rect. 14 1
300 371.07 radiation 20 43200 > th dose independent rect. 14 18
301 371.08 wind 9 4320 < th dose independent rect. 14 1
302 371.08 wind 5 1440 < th dose independent rect. 11 2
311 371.17 temperature 20 4320 > th dose independent rect. 21 1
315 371.20 wind 3 10 < th dose dependent sin 22 NA
316 371.21 temperature 20 4320 < th dose independent rect. 20 3
322 371.25 radiation 10 4320 > th dose independent rect. 16 1
344 371.27 radiation 10 4320 < th dose independent rect. 16 1
348 371.28 humidity 60 4320 < th dose dependent rect. 16 2
353 371.28 temperature 20 720 > th dose dependent rect. 23 15
362 371.32 radiation 20 43200 > th dose independent rect. 14 3
433 371.47 wind 9 10 > th dose dependent rect. 17 18
439 371.50 wind 1 10 < th dose dependent rect. 6 21
442 371.52 temperature 25 10 > th dose dependent sin 7 NA
499 371.55 humidity 70 43200 < th dose dependent rect. 19 16
506 371.59 radiation 1 4320 < th dose dependent rect. 23 6
514 371.63 humidity 60 43200 > th dose independent rect. 9 3
522 371.66 radiation 30 43200 < th dose dependent rect. 15 1
524 371.67 humidity 60 43200 > th dose independent rect. 10 1
531 371.69 temperature 25 270 > th dose independent rect. 6 5
534 371.70 temperature 20 720 > th dose dependent sin 6 NA
538 371.71 humidity 60 4320 > th dose dependent rect. 5 2
557 371.79 radiation 20 43200 < th dose independent rect. 15 1
562 371.79 temperature 25 10 > th dose dependent rect. 23 23
564 371.80 humidity 70 43200 < th dose dependent rect. 8 3
592 371.81 radiation 30 4320 < th dose dependent rect. 16 14
597 371.82 temperature 20 4320 > th dose independent rect. 20 3
603 371.84 radiation 30 43200 < th dose dependent rect. 14 3
607 371.85 temperature 25 10 > th dose dependent rect. 8 23
608 371.86 humidity 70 90 < th dose independent rect. 17 1
611 371.86 temperature 25 4320 > th dose dependent rect. 8 1
613 371.86 temperature 25 10 > th dose dependent rect. 6 21
622 371.90 humidity 60 43200 > th dose independent rect. 20 16
627 371.91 temperature 25 30 > th dose independent rect. 6 16
643 371.95 humidity 90 4320 < th dose dependent rect. 6 1
656 371.99 radiation 30 43200 < th dose dependent rect. 14 16
658 372.00 radiation 1 43200 > th dose dependent rect. 15 1
662 372.01 radiation 30 43200 < th dose dependent rect. 14 8
664 372.01 radiation 30 43200 < th dose dependent rect. 14 11
669 372.01 temperature 25 10 > th dose dependent rect. 8 19
676 372.02 atmosphere 1005 270 > th dose dependent rect. 11 8
680 372.02 temperature 25 30 > th dose dependent rect. 17 19
682 372.03 radiation 20 43200 > th dose independent sin 13 NA
684 372.03 radiation 10 4320 < th dose independent rect. 16 13
693 372.04 radiation 10 4320 < th dose independent rect. 16 9
696 372.04 temperature 25 10 > th dose dependent rect. 8 14
698 372.05 radiation 10 4320 < th dose independent rect. 16 7
705 372.05 temperature 25 10 > th dose dependent rect. 1 23
708 372.06 temperature 25 10 > th dose dependent rect. 1 21
717 372.07 temperature 25 10 > th dose dependent no NA NA
718 372.07 temperature 25 10 > th dose dependent rect. 8 16
726 372.09 humidity 60 43200 < th dose independent rect. 10 2
768 372.15 radiation 30 10 < th dose independent rect. 23 15
782 372.17 wind 5 1440 > th dose independent rect. 11 2
824 372.21 temperature 20 270 > th dose dependent rect. 4 17
827 372.22 humidity 80 4320 > th dose dependent rect. 4 4
879 372.28 radiation 20 10 > th dose dependent rect. 7 5
902 372.30 radiation 40 4320 < th dose dependent rect. 16 9
920 372.32 radiation 40 4320 < th dose dependent rect. 16 7
927 372.33 radiation 20 43200 < th dose independent rect. 14 8
929 372.33 radiation 20 43200 < th dose independent rect. 14 11
976 372.38 temperature 25 10 > th dose dependent rect. 13 23
980 372.40 humidity 70 4320 < th dose independent rect. 19 12