BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0532200 Os09g0532200|Os09g0532200
(218 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G01410.1 | chr4:578308-578991 FORWARD LENGTH=228 75 4e-14
AT5G06330.1 | chr5:1934961-1935584 REVERSE LENGTH=208 69 2e-12
AT3G44220.1 | chr3:15928216-15929645 FORWARD LENGTH=207 57 7e-09
AT2G35960.1 | chr2:15107150-15107782 FORWARD LENGTH=211 56 2e-08
AT4G09590.1 | chr4:6066128-6066763 FORWARD LENGTH=212 55 2e-08
AT2G35970.1 | chr2:15109007-15109642 FORWARD LENGTH=212 55 2e-08
AT5G22200.1 | chr5:7355688-7356871 FORWARD LENGTH=211 53 2e-07
AT3G11660.1 | chr3:3679031-3679660 REVERSE LENGTH=210 51 4e-07
>AT4G01410.1 | chr4:578308-578991 FORWARD LENGTH=228
Length = 227
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
Query: 46 YRPVMPQASVPRAAVYRXXXXXXXXXXXXXXXXVQFTLVLHNPSDRASLLYDGLVAYASY 105
YRP P+ +V AA+Y VQF+++ NP+ R S+ YD L Y +Y
Sbjct: 66 YRPHKPRLTVVGAAIY----DLNFTAPPLISTSVQFSVLARNPNRRVSIHYDKLSMYVTY 121
Query: 106 RGEXXXXXXXXXXXXQDRGADVAMSPLLGGAAVPVSPDXXXXXXXXXXXXXVQLRLVVMG 165
+ + + V ++P++GG +PVSP+ V +R+V+ G
Sbjct: 122 KDQIITPPLPLPPLRLGHKSTVVIAPVMGGNGIPVSPEVANGLKNDEAYGVVLMRVVIFG 181
Query: 166 RVKYRSGPFRSGWRDLYVRCNVVVGLSTEAAVAXXXXXXDVPLLEYPRCAVD 217
R+++++G ++G Y RC+V + + + VPLL C VD
Sbjct: 182 RLRWKAGAIKTGRYGFYARCDVWLRFNPSS-------NGQVPLLAPSTCKVD 226
>AT5G06330.1 | chr5:1934961-1935584 REVERSE LENGTH=208
Length = 207
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%)
Query: 80 QFTLVLHNPSDRASLLYDGLVAYASYRGEXXXXXXXXXXXXQDRGADVAMSPLLGGAAVP 139
QFTL NP+D+ + YD L YASYR + Q SP +GG +VP
Sbjct: 74 QFTLSSRNPNDKIGIYYDRLDVYASYRSQQITLPSPMLTTYQGHKEVNVWSPFVGGYSVP 133
Query: 140 VSPDXXXXXXXXXXXXXVQLRLVVMGRVKYRSGPFRSGWRDLYVRCNVVVGLSTEAA 196
V+P + L L + GRV+++ G F +G L+VRC+ ++ + AA
Sbjct: 134 VAPYNAFYLDQDHSSGAIMLMLHLDGRVRWKVGSFITGKYHLHVRCHALINFGSSAA 190
>AT3G44220.1 | chr3:15928216-15929645 FORWARD LENGTH=207
Length = 206
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 10/142 (7%)
Query: 79 VQFTLVLHNPSDRASLLYDGLVAYASYRGEXXXXXXXXXXXXQDRGADVAMSPLLGGAAV 138
+Q TL NP+D+ + YD L YASYR + Q SP L G V
Sbjct: 71 LQVTLSSRNPNDKIGIFYDRLDIYASYRNQQVTLATLLPATYQGHLDVTIWSPFLYGTTV 130
Query: 139 PVSPDXXXXXXXXXXXXXVQLRLVVMGRVKYRSGPFRSGWRDLYVRCNVVVGLSTEAAVA 198
PV+P V L + + G V+++ G + SG L+V C + L+ +
Sbjct: 131 PVAPYFSPALSQDLTAGMVLLNIKIDGWVRWKVGTWVSGRYRLHVNCPAYITLAGHFS-- 188
Query: 199 XXXXXXDVPLLEY---PRCAVD 217
D P ++Y RCAVD
Sbjct: 189 -----GDGPAVKYQLVQRCAVD 205
>AT2G35960.1 | chr2:15107150-15107782 FORWARD LENGTH=211
Length = 210
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%)
Query: 80 QFTLVLHNPSDRASLLYDGLVAYASYRGEXXXXXXXXXXXXQDRGADVAMSPLLGGAAVP 139
Q T+ N + R + YD L YA+YR + Q D SP + G +VP
Sbjct: 73 QITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVP 132
Query: 140 VSPDXXXXXXXXXXXXXVQLRLVVMGRVKYRSGPFRSGWRDLYVRCNVVVGLSTEAA 196
++P V L + GRV+++ G +G L+VRC + L+ +AA
Sbjct: 133 IAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLADKAA 189
>AT4G09590.1 | chr4:6066128-6066763 FORWARD LENGTH=212
Length = 211
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 49/117 (41%)
Query: 80 QFTLVLHNPSDRASLLYDGLVAYASYRGEXXXXXXXXXXXXQDRGADVAMSPLLGGAAVP 139
Q T+ N + + YD L AYASYR + Q D SPLL G VP
Sbjct: 74 QITIASRNRNSNIGIYYDHLHAYASYRNQQITLASDLPPTYQRHKEDSVWSPLLYGNQVP 133
Query: 140 VSPDXXXXXXXXXXXXXVQLRLVVMGRVKYRSGPFRSGWRDLYVRCNVVVGLSTEAA 196
++P L + V G+V+++ G G L+VRC + + +AA
Sbjct: 134 IAPFNAVALGDEQNSGVFTLTICVDGQVRWKVGTLTIGNYHLHVRCQAFINQADKAA 190
>AT2G35970.1 | chr2:15109007-15109642 FORWARD LENGTH=212
Length = 211
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 49/117 (41%)
Query: 80 QFTLVLHNPSDRASLLYDGLVAYASYRGEXXXXXXXXXXXXQDRGADVAMSPLLGGAAVP 139
Q T+ N + + YD L AYASYR + Q + SPLL G VP
Sbjct: 74 QITIASRNRNSNIGIYYDHLHAYASYRNQQITLASDLPPTYQRHKENSVWSPLLYGNQVP 133
Query: 140 VSPDXXXXXXXXXXXXXVQLRLVVMGRVKYRSGPFRSGWRDLYVRCNVVVGLSTEAA 196
++P L + V GRV+++ G G L+VRC + + +AA
Sbjct: 134 IAPFNAVALGDEQNSGVFTLTICVDGRVRWKVGTLTIGNYHLHVRCQAFINQADKAA 190
>AT5G22200.1 | chr5:7355688-7356871 FORWARD LENGTH=211
Length = 210
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 10/142 (7%)
Query: 79 VQFTLVLHNPSDRASLLYDGLVAYASYRGEXXXXXXXXXXXXQDRGADVAMSPLLGGAAV 138
+Q T+ NP+D+ + YD L Y +YR + Q SP L G+AV
Sbjct: 75 LQVTVSSRNPNDKIGIFYDRLDIYVTYRNQEVTLARLLPSTYQGHLEVTVWSPFLIGSAV 134
Query: 139 PVSPDXXXXXXXXXXXXXVQLRLVVMGRVKYRSGPFRSGWRDLYVRCNVVVGLSTEAAVA 198
PV+P V L + + G V+++ G + SG L+V C + ++ +
Sbjct: 135 PVAPYLSSALNEDLFAGLVLLNIKIDGWVRWKVGSWVSGSYRLHVNCPAFITVTGKLTGT 194
Query: 199 XXXXXXDVPLLEY---PRCAVD 217
P ++Y RCAVD
Sbjct: 195 G-------PAIKYQLVQRCAVD 209
>AT3G11660.1 | chr3:3679031-3679660 REVERSE LENGTH=210
Length = 209
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%)
Query: 80 QFTLVLHNPSDRASLLYDGLVAYASYRGEXXXXXXXXXXXXQDRGADVAMSPLLGGAAVP 139
Q TL NP+++ + YD L YA+YR + Q SP + G +VP
Sbjct: 72 QITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDIWSPFVYGTSVP 131
Query: 140 VSPDXXXXXXXXXXXXXVQLRLVVMGRVKYRSGPFRSGWRDLYVRCNVVVGLSTEA 195
++P V L + GRV+++ G F +G L+V+C + +A
Sbjct: 132 IAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKCPAYINFGNKA 187
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,524,567
Number of extensions: 63733
Number of successful extensions: 74
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 9
Length of query: 218
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 123
Effective length of database: 8,502,049
Effective search space: 1045752027
Effective search space used: 1045752027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)