BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0514400 Os09g0514400|AK060892
         (339 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0514400  Similar to Protein farnesyltransferase/geranyl...   676   0.0  
Os06g0677500  Protein prenyltransferase domain containing pr...    90   2e-18

>Os09g0514400 Similar to Protein farnesyltransferase/geranylgeranyltransferase
           type I alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX
           farnesyltransferase alpha subunit) (Ras proteins
           prenyltransferase alpha) (FTase-alpha) (Type I protein
           geranyl-geranyltransferase alpha subunit)
           (GGTase-I-alpha)
          Length = 339

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/339 (96%), Positives = 327/339 (96%)

Query: 1   MAPSSTSSEGASDEWLPPSRRPELADVVPVTQDDGPHPVVAIAYRDEFREVMDYFRALYF 60
           MAPSSTSSEGASDEWLPPSRRPELADVVPVTQDDGPHPVVAIAYRDEFREVMDYFRALYF
Sbjct: 1   MAPSSTSSEGASDEWLPPSRRPELADVVPVTQDDGPHPVVAIAYRDEFREVMDYFRALYF 60

Query: 61  AGERSVRALHLTAEVIDLNPGNYTVWHFRRLVLEALDADLREEMDFVDRIAECNPKNYQI 120
           AGERSVRALHLTAEVIDLNPGNYTVWHFRRLVLEALDADLREEMDFVDRIAECNPKNYQI
Sbjct: 61  AGERSVRALHLTAEVIDLNPGNYTVWHFRRLVLEALDADLREEMDFVDRIAECNPKNYQI 120

Query: 121 WHHKRWLAEKLGPDIANKEHEFTRKILSMDAKNYHAWSHRQWVLQALGGWETELQYCNQL 180
           WHHKRWLAEKLGPDIANKEHEFTRKILSMDAKNYHAWSHRQWVLQALGGWETELQYCNQL
Sbjct: 121 WHHKRWLAEKLGPDIANKEHEFTRKILSMDAKNYHAWSHRQWVLQALGGWETELQYCNQL 180

Query: 181 LEEDVFNNSAWNQRYLVITSSPLLGGLAAMRDSEVDYTVGAILANPQNESPWRYLKGLYK 240
           LEEDVFNNSAWNQRYLVITSSPLLGGLAAMRDSEVDYTVGAILANPQNESPWRYLKGLYK
Sbjct: 181 LEEDVFNNSAWNQRYLVITSSPLLGGLAAMRDSEVDYTVGAILANPQNESPWRYLKGLYK 240

Query: 241 GENNLLMADERISDVCLKVLKHDSTCVFAXXXXXXXXXXXXQPSDELKGTIEAIKNSDPE 300
           GENNLLMADERISDVCLKVLKHDSTCVFA            QPSDELKGTIEAIKNSDPE
Sbjct: 241 GENNLLMADERISDVCLKVLKHDSTCVFALSLLLDLLQIGLQPSDELKGTIEAIKNSDPE 300

Query: 301 ADEAVDADLATAICSILQRCDPLRINYWSWYRTTISSQT 339
           ADEAVDADLATAICSILQRCDPLRINYWSWYRTTISSQT
Sbjct: 301 ADEAVDADLATAICSILQRCDPLRINYWSWYRTTISSQT 339



>Os06g0677500 Protein prenyltransferase domain containing protein
          Length = 691

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 96/184 (52%), Gaps = 17/184 (9%)

Query: 68  ALHLTAEVIDLNPGNYTVWHFRRLVL----------EALDADLREEMDFVDRIAECNPKN 117
           AL L+ +++++NP  YT W++R+L            EA+ + + +E+  V+     NPK+
Sbjct: 44  ALGLSFKLLEINPEAYTAWNYRKLAFQHNIGELSEPEAIKSAIDDELRVVEVALRQNPKS 103

Query: 118 YQIWHHKRWLA-EKLGPDIANKEHEFTRKILSMDAKNYHAWSHRQWVLQALG-GWETELQ 175
           Y  W+H++WL  +KL P     E     K+L +DA+N+H W++R+++ + +G   E EL+
Sbjct: 104 YGAWYHRKWLLNQKLAPVDFKCEFGLLDKLLKVDARNFHGWNYRRFLARFMGVPEEEELK 163

Query: 176 YCNQLLEEDVFNNSAWNQRY-----LVITSSPLLGGLAAMRDSEVDYTVGAILANPQNES 230
           Y    + ++  N SAW+ R      L+I  S        +   E +    A+  +P ++S
Sbjct: 164 YTMDKISDNFSNYSAWHNRSILLSNLLIKQSKGFESKQKIFSEEFELVTQALFTDPSDQS 223

Query: 231 PWRY 234
            W Y
Sbjct: 224 GWFY 227



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,920,571
Number of extensions: 485342
Number of successful extensions: 1137
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1127
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 237
Effective length of database: 11,709,973
Effective search space: 2775263601
Effective search space used: 2775263601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)