Os06g0677500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os06g0677500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.96 | 0.387 | 6.99 | 0.385 | 0.69 | 1.47 | -0.668 | -0.372 | -0.211 | 7.23 | 21.35 | 255 | -- | -- |
| 68.01 | 0.384 | 6.98 | 0.46 | 0.688 | 1.44 | -0.601 | -- | -0.184 | 7.25 | 21.73 | 249 | -- | -- |
| 68.94 | 0.387 | 6.98 | 0.414 | 0.7 | 1.47 | -- | -0.16 | -0.191 | 7.28 | 21.99 | 252 | -- | -- |
| 68.95 | 0.387 | 6.97 | 0.442 | 0.709 | 1.45 | -- | -- | -0.184 | 7.33 | 21.93 | 259 | -- | -- |
| 81.62 | 0.423 | 6.98 | 0.56 | -- | 1.23 | -- | 0.264 | -0.135 | -- | 20.95 | 32 | -- | -- |
| 106.39 | 0.484 | 6.93 | 0.766 | 0.442 | -- | -0.123 | -- | 0.0538 | 11.1 | -- | -- | -- | -- |
| 106.45 | 0.483 | 6.93 | 0.762 | 0.443 | -- | -- | -- | 0.0537 | 11.2 | -- | -- | -- | -- |
| 81.62 | 0.423 | 6.98 | 0.524 | -- | 1.22 | -- | -- | -0.138 | -- | 21.93 | 259 | -- | -- |
| 73.77 | 0.4 | 6.99 | -- | 0.74 | 1.59 | -- | -- | -0.263 | 7.15 | 21.19 | 262 | -- | -- |
| 118.69 | 0.509 | 6.94 | 0.751 | -- | -- | -- | -- | 0.0497 | -- | -- | -- | -- | -- |
| 121.75 | 0.516 | 6.95 | -- | 0.435 | -- | -- | -- | -0.0312 | 11.1 | -- | -- | -- | -- |
| 87.69 | 0.436 | 7.01 | -- | -- | 1.49 | -- | -- | -0.225 | -- | 17.7 | 2 | -- | -- |
| 133.57 | 0.539 | 6.96 | -- | -- | -- | -- | -- | -0.0336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 2 | 64.66 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 17 | 65.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 150 | 68.58 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 172 | 69.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 183 | 69.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 217 | 69.63 | temperature | 20 | 270 | > th | dose dependent | sin | 23 | NA |
| 221 | 69.65 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 270 | 70.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 22 |
| 367 | 70.98 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 567 | 71.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 16 |
| 595 | 71.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 615 | 71.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 628 | 71.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 14 |
| 685 | 72.07 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 967 | 72.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 3 |