BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0677500 Os06g0677500|AK102430
         (691 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0677500  Protein prenyltransferase domain containing pr...  1272   0.0  
Os09g0514400  Similar to Protein farnesyltransferase/geranyl...    90   6e-18

>Os06g0677500 Protein prenyltransferase domain containing protein
          Length = 691

 Score = 1272 bits (3291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/668 (93%), Positives = 626/668 (93%)

Query: 24  LRVLQAQVLHNHHSRTYTKEALGLSFKLLEINPEAYTAWNYRKLAFQHNIGELSEPEAIK 83
           LRVLQAQVLHNHHSRTYTKEALGLSFKLLEINPEAYTAWNYRKLAFQHNIGELSEPEAIK
Sbjct: 24  LRVLQAQVLHNHHSRTYTKEALGLSFKLLEINPEAYTAWNYRKLAFQHNIGELSEPEAIK 83

Query: 84  SAIDDELRVVEVALRQNPKSYGAWYHRKWLLNQKLAPVDFKCEFGLLDKLLKVDARNFHG 143
           SAIDDELRVVEVALRQNPKSYGAWYHRKWLLNQKLAPVDFKCEFGLLDKLLKVDARNFHG
Sbjct: 84  SAIDDELRVVEVALRQNPKSYGAWYHRKWLLNQKLAPVDFKCEFGLLDKLLKVDARNFHG 143

Query: 144 WNYRRFLARFMGVPEEEELKYTMDKISDNFSNYSAWHNRSILLSNLLIKQSKGFESKQKI 203
           WNYRRFLARFMGVPEEEELKYTMDKISDNFSNYSAWHNRSILLSNLLIKQSKGFESKQKI
Sbjct: 144 WNYRRFLARFMGVPEEEELKYTMDKISDNFSNYSAWHNRSILLSNLLIKQSKGFESKQKI 203

Query: 204 FSEEFELVTQALFTDPSDQSGWFYHLWLLAQTSSPENPQLIASWPXXXXXXXXXXXXXIC 263
           FSEEFELVTQALFTDPSDQSGWFYHLWLLAQTSSPENPQLIASWP             IC
Sbjct: 204 FSEEFELVTQALFTDPSDQSGWFYHLWLLAQTSSPENPQLIASWPSNGSNLSLSSLSSIC 263

Query: 264 CYSLKEGILPIVLYFNEPVKGXXXXXXXXXXXXXXXKNIQWRPLSVTDSGHSNCWVTYLE 323
           CYSLKEGILPIVLYFNEPVKG               KNIQWRPLSVTDSGHSNCWVTYLE
Sbjct: 264 CYSLKEGILPIVLYFNEPVKGLSSSSVSLNSDLVVSKNIQWRPLSVTDSGHSNCWVTYLE 323

Query: 324 VSNLECNSLQQFSVEVSITNSDEIVSRSGSNYNCPVHFSFTFELSNNDSTAKDIDPIHEL 383
           VSNLECNSLQQFSVEVSITNSDEIVSRSGSNYNCPVHFSFTFELSNNDSTAKDIDPIHEL
Sbjct: 324 VSNLECNSLQQFSVEVSITNSDEIVSRSGSNYNCPVHFSFTFELSNNDSTAKDIDPIHEL 383

Query: 384 ISWDFSEPLLSHVNPSCICFEQLKITNSLVHKESNWHLERLSDEIDLFRELHDDNSKFXX 443
           ISWDFSEPLLSHVNPSCICFEQLKITNSLVHKESNWHLERLSDEIDLFRELHDDNSKF  
Sbjct: 384 ISWDFSEPLLSHVNPSCICFEQLKITNSLVHKESNWHLERLSDEIDLFRELHDDNSKFAK 443

Query: 444 XXXXXXXXXXXXIKSRGSSLVERKGYCEESLGLFNDLIDLDPSHKRYYEDERSLVLMDQL 503
                       IKSRGSSLVERKGYCEESLGLFNDLIDLDPSHKRYYEDERSLVLMDQL
Sbjct: 444 LTLARLLLACAAIKSRGSSLVERKGYCEESLGLFNDLIDLDPSHKRYYEDERSLVLMDQL 503

Query: 504 TCDMEAFKKYCSVKALPKLAPLNHVQLCRLSLTRIGFAERLLWVQMLDLSHNNLRSIEGL 563
           TCDMEAFKKYCSVKALPKLAPLNHVQLCRLSLTRIGFAERLLWVQMLDLSHNNLRSIEGL
Sbjct: 504 TCDMEAFKKYCSVKALPKLAPLNHVQLCRLSLTRIGFAERLLWVQMLDLSHNNLRSIEGL 563

Query: 564 EALQQLVCLNLGNNQISSFTALEPLTKIISLKVLDLSCNEIGTHPIDTTRYICPSPFSHR 623
           EALQQLVCLNLGNNQISSFTALEPLTKIISLKVLDLSCNEIGTHPIDTTRYICPSPFSHR
Sbjct: 564 EALQQLVCLNLGNNQISSFTALEPLTKIISLKVLDLSCNEIGTHPIDTTRYICPSPFSHR 623

Query: 624 VEACEAFEECRKKNINVEEFWDAILFFKHVNLVQLCLEGNAVTNKENLRTLVVTLNPSLK 683
           VEACEAFEECRKKNINVEEFWDAILFFKHVNLVQLCLEGNAVTNKENLRTLVVTLNPSLK
Sbjct: 624 VEACEAFEECRKKNINVEEFWDAILFFKHVNLVQLCLEGNAVTNKENLRTLVVTLNPSLK 683

Query: 684 WLDGKFVH 691
           WLDGKFVH
Sbjct: 684 WLDGKFVH 691



>Os09g0514400 Similar to Protein farnesyltransferase/geranylgeranyltransferase
           type I alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX
           farnesyltransferase alpha subunit) (Ras proteins
           prenyltransferase alpha) (FTase-alpha) (Type I protein
           geranyl-geranyltransferase alpha subunit)
           (GGTase-I-alpha)
          Length = 339

 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 96/184 (52%), Gaps = 17/184 (9%)

Query: 44  ALGLSFKLLEINPEAYTAWNYRKLAFQHNIGELSEPEAIKSAIDDELRVVEVALRQNPKS 103
           AL L+ +++++NP  YT W++R+L            EA+ + + +E+  V+     NPK+
Sbjct: 68  ALHLTAEVIDLNPGNYTVWHFRRLVL----------EALDADLREEMDFVDRIAECNPKN 117

Query: 104 YGAWYHRKWLLNQKLAPVDFKCEFGLLDKLLKVDARNFHGWNYRRFLARFMGVPEEEELK 163
           Y  W+H++WL  +KL P     E     K+L +DA+N+H W++R+++ + +G   E EL+
Sbjct: 118 YQIWHHKRWLA-EKLGPDIANKEHEFTRKILSMDAKNYHAWSHRQWVLQALG-GWETELQ 175

Query: 164 YTMDKISDNFSNYSAWHNRSILLSNLLIKQSKGFESKQKIFSEEFELVTQALFTDPSDQS 223
           Y    + ++  N SAW+ R      L+I  S        +   E +    A+  +P ++S
Sbjct: 176 YCNQLLEEDVFNNSAWNQRY-----LVITSSPLLGGLAAMRDSEVDYTVGAILANPQNES 230

Query: 224 GWFY 227
            W Y
Sbjct: 231 PWRY 234



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,473,564
Number of extensions: 775230
Number of successful extensions: 1952
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1934
Number of HSP's successfully gapped: 2
Length of query: 691
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 583
Effective length of database: 11,396,689
Effective search space: 6644269687
Effective search space used: 6644269687
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)