FiT-DB / Search/ Help/ Sample detail
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Os09g0514400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alpha subunit) (Ras proteins prenyltransferase alpha) (FTase-alpha) (Type I protein geranyl-geranyltransferase alpha subunit) (GGTase-I-alpha).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.36 | 0.217 | 13 | 0.305 | 0.72 | 0.873 | 0.193 | 0.62 | 0.332 | 2 | 21.5 | 1733 | -- | -- |
| 22.13 | 0.219 | 13.1 | 0.147 | 0.725 | 0.8 | 0.206 | -- | 0.295 | 2 | 21.7 | 1788 | -- | -- |
| 21.5 | 0.216 | 13 | 0.298 | 0.721 | 0.87 | -- | 0.611 | 0.331 | 1.99 | 21.5 | 1730 | -- | -- |
| 22.22 | 0.22 | 13.1 | 0.145 | 0.713 | 0.795 | -- | -- | 0.288 | 2.05 | 21.74 | 1821 | -- | -- |
| 49.04 | 0.326 | 13 | 0.251 | -- | 0.92 | -- | 0.556 | 0.305 | -- | 21.7 | 2390 | -- | -- |
| 42.23 | 0.305 | 13 | 0.505 | 0.717 | -- | 0.113 | -- | 0.535 | 1.92 | -- | -- | -- | -- |
| 42.28 | 0.304 | 13 | 0.502 | 0.717 | -- | -- | -- | 0.535 | 1.92 | -- | -- | -- | -- |
| 42.45 | 0.303 | 13 | 0.27 | -- | 0.778 | -- | -- | 0.346 | -- | 24.5 | 1022 | -- | -- |
| 22.66 | 0.222 | 13.1 | -- | 0.717 | 0.86 | -- | -- | 0.264 | 2.07 | 21.6 | 1837 | -- | -- |
| 73.32 | 0.4 | 13 | 0.531 | -- | -- | -- | -- | 0.551 | -- | -- | -- | -- | -- |
| 48.91 | 0.327 | 13 | -- | 0.726 | -- | -- | -- | 0.479 | 1.94 | -- | -- | -- | -- |
| 43.82 | 0.308 | 13 | -- | -- | 0.894 | -- | -- | 0.318 | -- | 24.7 | 1055 | -- | -- |
| 80.76 | 0.419 | 13 | -- | -- | -- | -- | -- | 0.492 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.86 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 3 | 21.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 5 | 21.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 18 |
| 67 | 22.09 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 93 | 22.33 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 95 | 22.35 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 105 | 22.41 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 114 | 22.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 116 | 22.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 156 | 22.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 175 | 22.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 215 | 22.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 240 | 22.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 276 | 22.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 441 | 22.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 516 | 23.06 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 554 | 23.11 | temperature | 10 | 720 | > th | dose dependent | sin | 13 | NA |
| 738 | 23.46 | temperature | 25 | 270 | < th | dose dependent | sin | 10 | NA |
| 959 | 24.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 8 |
| 1000 | 24.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 8 |
