BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0514400 Os09g0514400|AK060892
(339 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G59380.1 | chr3:21944209-21945781 FORWARD LENGTH=327 400 e-112
AT4G24490.1 | chr4:12655330-12658103 REVERSE LENGTH=679 92 4e-19
AT5G41820.1 | chr5:16740804-16743433 FORWARD LENGTH=688 73 2e-13
AT1G10095.1 | chr1:3297478-3300353 REVERSE LENGTH=421 49 4e-06
>AT3G59380.1 | chr3:21944209-21945781 FORWARD LENGTH=327
Length = 326
Score = 400 bits (1028), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/325 (60%), Positives = 247/325 (76%), Gaps = 7/325 (2%)
Query: 13 DEWLPPSRRPELADVVPVTQDDGPHPVVAIAYRDEFREVMDYFRALYFAGERSVRALHLT 72
DE +P S+R E +DVVP+TQDDGP+PVV IAY++EFRE MDYFRA+YF+ ERS RAL LT
Sbjct: 4 DETVPLSQRLEWSDVVPLTQDDGPNPVVPIAYKEEFRETMDYFRAIYFSDERSPRALRLT 63
Query: 73 AEVIDLNPGNYTVWHFRRLVLEALDADLREEMDFVDRIAECNPKNYQIWHHKRWLAEKLG 132
E + LN GNYTVWHFRRLVLEAL+ DL EE++F++RIAE N KNYQ+WHH+RW+AEKLG
Sbjct: 64 EETLLLNSGNYTVWHFRRLVLEALNHDLFEELEFIERIAEDNSKNYQLWHHRRWVAEKLG 123
Query: 133 PDIANKEHEFTRKILSMDAKNYHAWSHRQWVLQALGGWETELQYCNQLLEEDVFNNSAWN 192
PD+A +E EFTR++LS+DAK+YHAWSHRQW L+ALGGWE EL YC++LLE DVFNNSAWN
Sbjct: 124 PDVAGRELEFTRRVLSLDAKHYHAWSHRQWTLRALGGWEDELDYCHELLEADVFNNSAWN 183
Query: 193 QRYLVITSSPLLGGLAAMRDSEVDYTVGAILANPQNESPWRYLKGLYKGENNLLMADERI 252
QRY VIT SPLLGGL AMR+SEV YT+ AIL NP NES WRYLK LYK + ++D +
Sbjct: 184 QRYYVITQSPLLGGLEAMRESEVSYTIKAILTNPANESSWRYLKALYKDDKESWISDPSV 243
Query: 253 SDVCLKVL-KHDSTCVFAXXXXXXXXXXXXQPSDELKGTIEAIKNSDPEADEAVDADLAT 311
S VCL VL + D FA +P++E K ++ A+ N +PE +LA
Sbjct: 244 SSVCLNVLSRTDCFHGFALSTLLDLLCDGLRPTNEHKDSVRALANEEPE------TNLAN 297
Query: 312 AICSILQRCDPLRINYWSWYRTTIS 336
+C+IL R DP+R NYW+W ++ I+
Sbjct: 298 LVCTILGRVDPVRANYWAWRKSKIT 322
>AT4G24490.1 | chr4:12655330-12658103 REVERSE LENGTH=679
Length = 678
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 68 ALHLTAEVIDLNPGNYTVWHFRRLVLE-----------ALDADLREEMDFVDRIAECNPK 116
A+ L+ +++++NP YT W++R+L +E + A L EE+ V+ N K
Sbjct: 44 AIELSTKLLEINPEAYTAWNYRKLAVEDRLARIEPDPNLVSAILDEELRVVESALRQNFK 103
Query: 117 NYQIWHHKRWLAEKLGPDIANKEHEFTRKILSMDAKNYHAWSHRQWVLQALGGWET-ELQ 175
+Y WHH++W+ K + N E K +D++N+HAW++R++V++ E ELQ
Sbjct: 104 SYGAWHHRKWVLSKGHSSVGN-ELRLLEKFQKLDSRNFHAWNYRRFVVELTNRSEQDELQ 162
Query: 176 YCNQLLEEDVFNNSAWNQRYLVITSSPLLGGLAAMRD----SEVDYTVGAILANPQNESP 231
Y + ++ + N SAW+ R ++++S M + E D+ AI P ++S
Sbjct: 163 YTDDMINNNFSNYSAWHNRSVLLSSLLAQNADGFMPNIKIPEEYDFVHSAIFTEPDDQSG 222
Query: 232 WRY 234
W Y
Sbjct: 223 WFY 225
>AT5G41820.1 | chr5:16740804-16743433 FORWARD LENGTH=688
Length = 687
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 30/233 (12%)
Query: 32 QDDGPHPVVAIAYRDEFREVMDYFRALYFAGERSVRALHLTAEVIDLNPGNYTVWHFRRL 91
+++ P+P A E R + F + + + A+ L+A+++ NP YT W++ +L
Sbjct: 6 REEDPNPEETAAKALELRSLQSQFMSNHHQKIYTKEAIQLSAKLLITNPEFYTAWNYPKL 65
Query: 92 VLEA-LDAD---------LREEMDFVDRIAECNPKNYQIWHHKRWLAEKLG---PDIANK 138
E+ LD D + EE+ V E N K+Y W+H++W+ K G P + N+
Sbjct: 66 AFESRLDEDSDPSLVNSIIDEELGVVQNALERNVKSYGAWYHRKWVLSKKGHYYPSLENE 125
Query: 139 ---EHEFTRKILSMD--------AKNYHAWSHRQWVLQALG-GWETELQYCNQLLEEDVF 186
+++ ++ ++N+HAW++R++V++ E ELQY ++ + F
Sbjct: 126 LQLLNDYQKQAHQKQDDEKQDDPSRNFHAWNYRRFVVELTKTSEEDELQYTTDMISDISF 185
Query: 187 N-NSAWNQRYLVITSSPLLGGLAAMRDS----EVDYTVGAILANPQNESPWRY 234
SAW+ R ++++S M E+DY AI + +S W Y
Sbjct: 186 TIYSAWHYRSVLVSSLVAKKADGFMPKETIRRELDYVHSAIFTLEEKQSGWFY 238
>AT1G10095.1 | chr1:3297478-3300353 REVERSE LENGTH=421
Length = 420
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 72 TAEVIDLNPGNYTVWHFRRLVLEALD--ADLREEMDFVDRIAECNPKNYQIWHHKRWLAE 129
+ V+ L+ T W+ R+L+L D + EE+ I +PK+ W H+RW+ +
Sbjct: 124 SQSVLLLSSDFGTAWNARKLILSKKDHLSAFTEELRLSGLILSNSPKSESTWSHRRWIIK 183
Query: 130 KLGP------DIANKEHEFTRKILSMDAKNYHAWSHRQWVLQAL 167
+ +I KE E I NY AW HR W++ +
Sbjct: 184 MISQSFSTLQEIITKESELVESIGERSKMNYRAWYHRCWLVSYM 227
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,575,003
Number of extensions: 306294
Number of successful extensions: 710
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 691
Number of HSP's successfully gapped: 6
Length of query: 339
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 240
Effective length of database: 8,392,385
Effective search space: 2014172400
Effective search space used: 2014172400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)