BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0677500 Os06g0677500|AK102430
(691 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G24490.1 | chr4:12655330-12658103 REVERSE LENGTH=679 452 e-127
AT5G41820.1 | chr5:16740804-16743433 FORWARD LENGTH=688 376 e-104
AT3G59380.1 | chr3:21944209-21945781 FORWARD LENGTH=327 80 5e-15
AT1G10095.1 | chr1:3297478-3300353 REVERSE LENGTH=421 50 3e-06
>AT4G24490.1 | chr4:12655330-12658103 REVERSE LENGTH=679
Length = 678
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 277/686 (40%), Positives = 387/686 (56%), Gaps = 57/686 (8%)
Query: 24 LRVLQAQVLHNHHSRTYTKEALGLSFKLLEINPEAYTAWNYRKLAFQHNIGELS-EPEAI 82
LR LQ+Q + NHH + YT EA+ LS KLLEINPEAYTAWNYRKLA + + + +P +
Sbjct: 24 LRSLQSQFMTNHHDKIYTNEAIELSTKLLEINPEAYTAWNYRKLAVEDRLARIEPDPNLV 83
Query: 83 KSAIDDELRVVEVALRQNPKSYGAWYHRKWLLNQKLAPVDFKCEFGLLDKLLKVDARNFH 142
+ +D+ELRVVE ALRQN KSYGAW+HRKW+L++ + V E LL+K K+D+RNFH
Sbjct: 84 SAILDEELRVVESALRQNFKSYGAWHHRKWVLSKGHSSV--GNELRLLEKFQKLDSRNFH 141
Query: 143 GWNYRRFLARFMGVPEEEELKYTMDKISDNFSNYSAWHNRSILLSNLLIKQSKGFESKQK 202
WNYRRF+ E++EL+YT D I++NFSNYSAWHNRS+LLS+LL + + GF K
Sbjct: 142 AWNYRRFVVELTNRSEQDELQYTDDMINNNFSNYSAWHNRSVLLSSLLAQNADGFMPNIK 201
Query: 203 IFSEEFELVTQALFTDPSDQSGWFYHLWLLAQTSSPENPQLIASWPXXXXXXX------- 255
I EE++ V A+FT+P DQSGWFYHLWLL QT + E P L +SWP
Sbjct: 202 I-PEEYDFVHSAIFTEPDDQSGWFYHLWLLDQTLNVETPLLTSSWPSHGSSIILSGAGCL 260
Query: 256 XXXXXXICCYSLKEGILPIVLYFNEPVKGXXXXXXXXXXXXXXXKNIQWRPLSVTDSGHS 315
+ + G P++LYF++ V G + + W P+ +S S
Sbjct: 261 SGSSSMFTTFCSESGSFPLILYFDQAVGGVSSSTVTIDSELKGNEGLVWEPIPNKNSQVS 320
Query: 316 NCWVTYLE-VSNLECNSLQQFSVEVSITNSDEIVSRSGSNYNCPVHFSFTFELSNNDSTA 374
WV L+ VS+ C ++ V++ + NS IVS G N+N P F FT
Sbjct: 321 CVWVARLKYVSSDPC----EYKVKIRVGNSPGIVSSRGYNFNAPYEFVFTAH-------- 368
Query: 375 KDIDPIHELISWDFSEPLLSHVNPSCICFEQLKITNSLV-------HKESNWHLERLSDE 427
+H+ + D E ++S + I + K NSLV + W E + E
Sbjct: 369 -----VHDTVE-DSQEGIVSWTDGFDIWDAKSKDLNSLVTLDRLNAEMDFKWRQEAIDSE 422
Query: 428 IDLFRELHDDNSKFXXXXXXXXXXXXXXIKSRGSSLVERKG-YCEESLGLFNDLIDLDPS 486
++ F L D SK + S + KG + EE L L+NDL+ LD S
Sbjct: 423 VECFGILPD--SKIGKLTLARLLMAREAMVSDDAV----KGVHYEEILQLYNDLMALDSS 476
Query: 487 HKRYYEDERSLVLMDQLTCDMEAFKKYCSVKALPKLAPLNHV---QLCRLSLTRIGFAER 543
H +YY+DE S + ++T E+ ++ L + +N++ +L LSL+RI E+
Sbjct: 477 HYQYYKDEHSKAFLHKVTSSSESLSRH-----LLRYRDMNNLVCLRLNNLSLSRIASVEK 531
Query: 544 LLWVQMLDLSHNNLRSIEGLEALQQLVCLNLGNNQISSFTALEPLTKIISLKVLDLSCNE 603
LL+VQMLDLSHN L S EGLEA+Q L CLNL +N+I SF+AL+ L + LKVLD+S N
Sbjct: 532 LLFVQMLDLSHNELHSTEGLEAMQLLSCLNLSHNRIRSFSALDSLRHVKQLKVLDVSHNH 591
Query: 604 IGTHPIDTTRYICPSPFSHRVEACEAFEECRKKNIN-VEEFWDAILFFKHVNLVQLCLEG 662
IG H +DTTRY+C SP S+ + ++ K+N V ++WDA +NL QL + G
Sbjct: 592 IGKHSVDTTRYLCSSPLSN---SELGQDDVGKQNPGLVTKYWDAYCVLTDLNLKQLDIAG 648
Query: 663 NAVTNKENLRTLVVTLNPSLKWLDGK 688
N + +E + V+ + P L WLDG+
Sbjct: 649 NEIAGEE-FSSFVLQVVPKLVWLDGQ 673
>AT5G41820.1 | chr5:16740804-16743433 FORWARD LENGTH=688
Length = 687
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 259/697 (37%), Positives = 366/697 (52%), Gaps = 69/697 (9%)
Query: 24 LRVLQAQVLHNHHSRTYTKEALGLSFKLLEINPEAYTAWNYRKLAFQHNIGELSEPEAIK 83
LR LQ+Q + NHH + YTKEA+ LS KLL NPE YTAWNY KLAF+ + E S+P +
Sbjct: 22 LRSLQSQFMSNHHQKIYTKEAIQLSAKLLITNPEFYTAWNYPKLAFESRLDEDSDPSLVN 81
Query: 84 SAIDDELRVVEVALRQNPKSYGAWYHRKWLLNQK--LAPVDFKCEFGLLDKLLKVD---- 137
S ID+EL VV+ AL +N KSYGAWYHRKW+L++K P + E LL+ K
Sbjct: 82 SIIDEELGVVQNALERNVKSYGAWYHRKWVLSKKGHYYP-SLENELQLLNDYQKQAHQKQ 140
Query: 138 --------ARNFHGWNYRRFLARFMGVPEEEELKYTMDKISD-NFSNYSAWHNRSILLSN 188
+RNFH WNYRRF+ EE+EL+YT D ISD +F+ YSAWH RS+L+S+
Sbjct: 141 DDEKQDDPSRNFHAWNYRRFVVELTKTSEEDELQYTTDMISDISFTIYSAWHYRSVLVSS 200
Query: 189 LLIKQSKGFESKQKIFSEEFELVTQALFTDPSDQSGWFYHLWLLAQTSSPENPQLIASWP 248
L+ K++ GF K+ I E + V A+FT QSGWFY+LWLL QT E P +SWP
Sbjct: 201 LVAKKADGFMPKETI-RRELDYVHSAIFTLEEKQSGWFYYLWLLDQTVKMEIPLRFSSWP 259
Query: 249 XXXXXX---------XXXXXXXICCYSLKEGILPIVLYFNEPVKGXXXXXXXXXXXXXXX 299
+ + + G P++LYF++ V G
Sbjct: 260 SDGSIIILSGPDCFNASSSTTKLTTFCSESGSFPLILYFDQAVSG---VSSSTVTIGSEL 316
Query: 300 KNIQWRPLSVTDSGH--SNCWVTYLEVSNLE-CNSLQQFSVEVSITNSDEIVSRSGSNYN 356
K++ W P+S + S WV L+ E C S ++ V+VS+ IVS G N
Sbjct: 317 KDLVWEPVSDKKNSQVDSCVWVARLKFDCREPCFSRKETKVKVSLGG---IVSSMGCNLT 373
Query: 357 CPVHFSFTFELSNNDSTAKDIDPIHELISWDFSEPLLSHVNPSCICFEQLKITNSLVHKE 416
P F FT + +D+ ++ ++SW + + + + + +T
Sbjct: 374 APYEFVFTLRI--HDTVEVELSQQESIVSWTDG---FDNWDDNALSNDLNSLTALNADTG 428
Query: 417 SNWHLERLSDEIDLFRELHDDNSKFXXXXXXXXXXXXXXIKSRGSSLVERKGYCEESLGL 476
W + + EI+LFR L D SK + S G + +E L L
Sbjct: 429 FEWRKKAIKIEIELFRTLPD--SKIGKLILARLLMAEETMISNGV-------HYKEILQL 479
Query: 477 FNDLIDLDPSHKRYYEDERSLVLMDQLTCDMEAFKKYCSVKALPKLAPLNHV---QLCRL 533
+NDL+ LD H +YY+DE S+ L+ ++T E+ ++ L + +N++ +L L
Sbjct: 480 YNDLMALDSWHNQYYKDEHSVALIHKVTSRTESMSRH-----LFRYRNMNNIICLRLNNL 534
Query: 534 SLTRIGFAERLLWVQMLDLSHNNLRSIEGLEALQQLVCLNLGNNQISSFTALEPLTKIIS 593
+L+RI E+LL+VQMLDLSHN L S EGLEA+Q L CLNL +N+I SF+AL+ L +
Sbjct: 535 TLSRIAAVEKLLFVQMLDLSHNELHSAEGLEAMQLLCCLNLSHNRIRSFSALDSLRHLKQ 594
Query: 594 LKVLDLSCNEI-GTHPIDTTRYICPSPFSHRVEACEAFEECRKKNINVEEFWDAILFFKH 652
L+VLD+S N I G P+DTTRY+C SP S+ + E E K + DA L +
Sbjct: 595 LRVLDVSHNHICGELPVDTTRYLCSSPLSN---SGETGREVPNK------YQDAYLVLRD 645
Query: 653 -VNLVQLCLEGN-AVTNKENLRTLVVTLNPSLKWLDG 687
+ L QL + GN + E + V + P L WLDG
Sbjct: 646 LMKLKQLDIRGNDLIFAGEEFSSFVRQVVPKLVWLDG 682
>AT3G59380.1 | chr3:21944209-21945781 FORWARD LENGTH=327
Length = 326
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 17/173 (9%)
Query: 55 NPEAYTAWNYRKLAFQHNIGELSEPEAIKSAIDDELRVVEVALRQNPKSYGAWYHRKWLL 114
N YT W++R+L EA+ + +EL +E N K+Y W+HR+W+
Sbjct: 70 NSGNYTVWHFRRLVL----------EALNHDLFEELEFIERIAEDNSKNYQLWHHRRWVA 119
Query: 115 NQKLAPVDFKCEFGLLDKLLKVDARNFHGWNYRRFLARFMGVPEEEELKYTMDKISDNFS 174
+KL P E ++L +DA+++H W++R++ R +G E+EL Y + + +
Sbjct: 120 -EKLGPDVAGRELEFTRRVLSLDAKHYHAWSHRQWTLRALG-GWEDELDYCHELLEADVF 177
Query: 175 NYSAWHNRSILLSNLLIKQSKGFESKQKIFSEEFELVTQALFTDPSDQSGWFY 227
N SAW+ R +I QS + + E +A+ T+P+++S W Y
Sbjct: 178 NNSAWNQRY-----YVITQSPLLGGLEAMRESEVSYTIKAILTNPANESSWRY 225
>AT1G10095.1 | chr1:3297478-3300353 REVERSE LENGTH=421
Length = 420
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 60 TAWNYRKLAFQHNIGELSEPEAIKSAIDDELRVVEVALRQNPKSYGAWYHRKWLLNQKLA 119
TAWN RKL LS+ + + SA +ELR+ + L +PKS W HR+W++ K+
Sbjct: 136 TAWNARKLI-------LSKKDHL-SAFTEELRLSGLILSNSPKSESTWSHRRWII--KMI 185
Query: 120 PVDFKC-------EFGLLDKLLKVDARNFHGWNYRRFLARFMGVPEE-EELKYTMDKISD 171
F E L++ + + N+ W +R +L +M + + +EL +
Sbjct: 186 SQSFSTLQEIITKESELVESIGERSKMNYRAWYHRCWLVSYMTIEQVIQELNKSKRWAGL 245
Query: 172 NFSNYSAWHNRSIL----LSNLLIKQSKGFESKQ--KIFSEEFE 209
+ ++ S +H R L L +L +K S ++ + KI+ EE +
Sbjct: 246 HVADSSCFHYRRRLMLKILESLYVKGSSAYDKTEARKIWKEELD 289
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,202,743
Number of extensions: 577615
Number of successful extensions: 1535
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1499
Number of HSP's successfully gapped: 4
Length of query: 691
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 586
Effective length of database: 8,227,889
Effective search space: 4821542954
Effective search space used: 4821542954
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)