BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0513100 Os09g0513100|AK120151
         (308 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0513100  Similar to Nicotiana tabacum (clone 1) activat...   644   0.0  
Os04g0615100  Similar to Lecithine cholesterol acyltransfera...   314   5e-86

>Os09g0513100 Similar to Nicotiana tabacum (clone 1) activating factor DNA
           sequence. (Fragment)
          Length = 308

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/308 (100%), Positives = 308/308 (100%)

Query: 1   MVMIFAKVTDKVMVGLRAKLETAYKASGGKKVNIISHSMGGLLVSCFMSMNRDIFAKYVN 60
           MVMIFAKVTDKVMVGLRAKLETAYKASGGKKVNIISHSMGGLLVSCFMSMNRDIFAKYVN
Sbjct: 1   MVMIFAKVTDKVMVGLRAKLETAYKASGGKKVNIISHSMGGLLVSCFMSMNRDIFAKYVN 60

Query: 61  KWICIACPFQGAPGCINDSLLTGLQFVYGFESFFFVSRWVMHQLLVECPSIYEMLPNPHF 120
           KWICIACPFQGAPGCINDSLLTGLQFVYGFESFFFVSRWVMHQLLVECPSIYEMLPNPHF
Sbjct: 61  KWICIACPFQGAPGCINDSLLTGLQFVYGFESFFFVSRWVMHQLLVECPSIYEMLPNPHF 120

Query: 121 KWKKAPVVQVWRKKPEKDGIAELVLYEATDCLSLFQEALRNNELKYNGKTIALPFNMSVF 180
           KWKKAPVVQVWRKKPEKDGIAELVLYEATDCLSLFQEALRNNELKYNGKTIALPFNMSVF
Sbjct: 121 KWKKAPVVQVWRKKPEKDGIAELVLYEATDCLSLFQEALRNNELKYNGKTIALPFNMSVF 180

Query: 181 KWATETRRILEDAELPDTVSFYNIYGTSYDTPYDVCYGSESSPIGDLSEVCHTMPVYTYV 240
           KWATETRRILEDAELPDTVSFYNIYGTSYDTPYDVCYGSESSPIGDLSEVCHTMPVYTYV
Sbjct: 181 KWATETRRILEDAELPDTVSFYNIYGTSYDTPYDVCYGSESSPIGDLSEVCHTMPVYTYV 240

Query: 241 DGDGTVPIESTMADGFAAKERVGIEADHRGLLCDENVFELLKKWLGVKEESTRRRRLSKS 300
           DGDGTVPIESTMADGFAAKERVGIEADHRGLLCDENVFELLKKWLGVKEESTRRRRLSKS
Sbjct: 241 DGDGTVPIESTMADGFAAKERVGIEADHRGLLCDENVFELLKKWLGVKEESTRRRRLSKS 300

Query: 301 KVTDFAPS 308
           KVTDFAPS
Sbjct: 301 KVTDFAPS 308



>Os04g0615100 Similar to Lecithine cholesterol acyltransferase-like protein
          Length = 533

 Score =  314 bits (805), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 143/273 (52%), Positives = 194/273 (71%), Gaps = 2/273 (0%)

Query: 19  KLETAYKASGGKKVNIISHSMGGLLVSCFMSMNRDIFAKYVNKWICIACPFQGAPGCIND 78
           KLE+ Y ASG KK+N+I+HSMGGLLV CFMS++ D+F KY+  WI IA PFQGAPG I  
Sbjct: 160 KLESVYIASGEKKINLITHSMGGLLVKCFMSLHSDVFEKYIKSWIAIAAPFQGAPGYITT 219

Query: 79  SLLTGLQFVYGFESFFFVSRWVMHQLLVECPSIYEMLPNPHFKWKKAPVVQVWRKKPEKD 138
           SLL G+ FV G+ES FF+S+W M QLL+ECPSIYE+L N  F+W+  P +Q+WR+K + +
Sbjct: 220 SLLNGMSFVEGWESRFFISKWSMQQLLLECPSIYELLANSTFQWEDTPYLQIWRQKLDTN 279

Query: 139 GIAELVL--YEATDCLSLFQEALRNNELKYNGKTIALPFNMSVFKWATETRRILEDAELP 196
           G    +L  YE  + + + +EAL  +E+  +G  I LP +M + +WA ET+ +L +A+LP
Sbjct: 280 GKKSAMLESYEPDEAIKMIREALSKHEIISDGMHIPLPLDMDILRWAKETQDVLCNAKLP 339

Query: 197 DTVSFYNIYGTSYDTPYDVCYGSESSPIGDLSEVCHTMPVYTYVDGDGTVPIESTMADGF 256
            +V FYNIYGT YDT + V YGSE  PI +LS++ +T   Y  VDGDG+VP+ES  ADG 
Sbjct: 340 KSVKFYNIYGTDYDTAHTVRYGSEHHPISNLSDLLYTQGNYICVDGDGSVPVESAKADGL 399

Query: 257 AAKERVGIEADHRGLLCDENVFELLKKWLGVKE 289
            A  RVG+ ADHRG++CD +VF +++ WL   E
Sbjct: 400 DAVARVGVAADHRGIVCDRHVFRIIQHWLHAGE 432



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,015,890
Number of extensions: 476329
Number of successful extensions: 938
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 937
Number of HSP's successfully gapped: 2
Length of query: 308
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 207
Effective length of database: 11,762,187
Effective search space: 2434772709
Effective search space used: 2434772709
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)