Os09g0513100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nicotiana tabacum (clone 1) activating factor DNA sequence. (Fragment).
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Os09g0513100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nicotiana tabacum (clone 1) activating factor DNA sequence. (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.74 | 0.42 | 10.6 | -2.29 | 1.2 | -1.4 | 1.15 | 1.9 | -0.459 | 0.991 | 23.63 | 4898 | -- | -- |
| 82.61 | 0.423 | 10.7 | -2.65 | 1.19 | -1.49 | 1.16 | -- | -0.47 | 0.954 | 22.4 | 8227 | -- | -- |
| 85.07 | 0.43 | 10.6 | -2.28 | 1.22 | -1.39 | -- | 1.99 | -0.429 | 0.964 | 23.6 | 5137 | -- | -- |
| 88.16 | 0.437 | 10.7 | -2.66 | 1.2 | -1.52 | -- | -- | -0.469 | 1.01 | 22.31 | 8225 | -- | -- |
| 166.02 | 0.603 | 10.7 | -3.33 | -- | -0.916 | -- | -0.32 | -0.74 | -- | 23.5 | 6020 | -- | -- |
| 148.11 | 0.571 | 10.8 | -3.61 | 1.13 | -- | 1.09 | -- | -1.1 | 1.01 | -- | -- | -- | -- |
| 153.06 | 0.579 | 10.8 | -3.65 | 1.13 | -- | -- | -- | -1.1 | 0.976 | -- | -- | -- | -- |
| 166.63 | 0.604 | 10.7 | -3.23 | -- | -0.922 | -- | -- | -0.71 | -- | 23.5 | 6020 | -- | -- |
| 105.25 | 0.478 | 10.5 | -- | 1.3 | -3.09 | -- | -- | 0.279 | 0.628 | 19.4 | 31287 | -- | -- |
| 232.23 | 0.712 | 10.8 | -3.61 | -- | -- | -- | -- | -1.08 | -- | -- | -- | -- | -- |
| 504.19 | 1.05 | 10.7 | -- | 1.07 | -- | -- | -- | -0.696 | 0.831 | -- | -- | -- | -- |
| 186.66 | 0.636 | 10.6 | -- | -- | -3.13 | -- | -- | 0.0943 | -- | 18.6 | 46313 | -- | -- |
| 575.57 | 1.12 | 10.7 | -- | -- | -- | -- | -- | -0.68 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.72 | radiation | 10 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 7 | 77.73 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 13 | 78.11 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 15 | 78.67 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 20 | 79.03 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 45 | 79.16 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 76 | 80.51 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 86 | 80.54 | radiation | 10 | 43200 | < th | dose independent | sin | 10 | NA |
| 104 | 80.94 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 109 | 81.07 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 110 | 81.08 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 123 | 81.14 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 128 | 81.37 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 149 | 81.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 174 | 81.90 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 184 | 82.02 | humidity | 90 | 43200 | > th | dose dependent | sin | 15 | NA |
| 193 | 82.09 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 13 |
| 202 | 82.12 | radiation | 40 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 203 | 82.12 | radiation | 30 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 205 | 82.12 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 215 | 82.14 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 12 |
| 225 | 82.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 227 | 82.17 | radiation | 30 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 243 | 82.21 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 248 | 82.22 | radiation | 10 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 257 | 82.24 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 306 | 82.43 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 313 | 82.44 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 20 |
| 327 | 82.49 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 331 | 82.51 | humidity | 90 | 43200 | > th | dose independent | sin | 16 | NA |
| 335 | 82.51 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 337 | 82.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 384 | 82.61 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 19 |
| 390 | 82.62 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 404 | 82.63 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 411 | 82.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 414 | 82.65 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 417 | 82.66 | temperature | 20 | 4320 | > th | dose dependent | sin | 9 | NA |
| 430 | 82.69 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 431 | 82.69 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 449 | 82.72 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 15 |
| 452 | 82.73 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 13 |
| 458 | 82.74 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 492 | 82.80 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 509 | 82.84 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 15 |
| 511 | 82.84 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 522 | 82.86 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 13 |
| 533 | 82.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 554 | 82.90 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 574 | 82.91 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 609 | 82.98 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 697 | 83.16 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 707 | 83.17 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 716 | 83.19 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 722 | 83.21 | temperature | 25 | 4320 | > th | dose independent | sin | 2 | NA |
| 736 | 83.23 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 752 | 83.26 | temperature | 25 | 4320 | < th | dose independent | sin | 1 | NA |
| 754 | 83.26 | temperature | 20 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 778 | 83.30 | temperature | 20 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 867 | 83.45 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 886 | 83.47 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 914 | 83.52 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 915 | 83.52 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 968 | 83.60 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 975 | 83.61 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 15 |
| 977 | 83.62 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 978 | 83.62 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 987 | 83.63 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 989 | 83.63 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 6 |