BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0512700 Os09g0512700|AK059516
(410 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0512700 Armadillo-like helical domain containing protein 686 0.0
Os03g0271400 Armadillo-like helical domain containing protein 91 1e-18
Os03g0822700 Armadillo-like helical domain containing protein 84 2e-16
>Os09g0512700 Armadillo-like helical domain containing protein
Length = 410
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/410 (85%), Positives = 351/410 (85%)
Query: 1 MAMAARARCSRQPNSHRXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDGVENRSAARQWAT 60
MAMAARARCSRQPNSHR EGDGVENRSAARQWAT
Sbjct: 1 MAMAARARCSRQPNSHRLLAVVVLAAILLLPVASAAAAVVAAVAEGDGVENRSAARQWAT 60
Query: 61 GKDXXXXXXXXXXXXXXXXXXDEFAGGFGSLDSMLQWAIGNSDPDKLKEQAEGVQKLSAD 120
GKD DEFAGGFGSLDSMLQWAIGNSDPDKLKEQAEGVQKLSAD
Sbjct: 61 GKDEGELVSGEESRGGGSVVEDEFAGGFGSLDSMLQWAIGNSDPDKLKEQAEGVQKLSAD 120
Query: 121 ELLKRRMEIKELMEKLKMPSDADLMKIAIADLNNSSISLEDRQRALQELLILVEPIDNAN 180
ELLKRRMEIKELMEKLKMPSDADLMKIAIADLNNSSISLEDRQRALQELLILVEPIDNAN
Sbjct: 121 ELLKRRMEIKELMEKLKMPSDADLMKIAIADLNNSSISLEDRQRALQELLILVEPIDNAN 180
Query: 181 DLDKLGGLVAVIQDLNNANEEIRTTSAWVLGKASQNNALVQNQILGYGALARLVKMGYAT 240
DLDKLGGLVAVIQDLNNANEEIRTTSAWVLGKASQNNALVQNQILGYGALARLVKMGYAT
Sbjct: 181 DLDKLGGLVAVIQDLNNANEEIRTTSAWVLGKASQNNALVQNQILGYGALARLVKMGYAT 240
Query: 241 SAEEATKALYAISALVRDNINGQEAFHSENGSAMLQHILASNSVDVRLQKKAVFLVTDLA 300
SAEEATKALYAISALVRDNINGQEAFHSENGSAMLQHILASNSVDVRLQKKAVFLVTDLA
Sbjct: 241 SAEEATKALYAISALVRDNINGQEAFHSENGSAMLQHILASNSVDVRLQKKAVFLVTDLA 300
Query: 301 DFQLNSGNSGLPFLSDRIFLKSLVDMLSRFDLDLQEXXXXXXXXXXXXXXTEATDFESCD 360
DFQLNSGNSGLPFLSDRIFLKSLVDMLSRFDLDLQE TEATDFESCD
Sbjct: 301 DFQLNSGNSGLPFLSDRIFLKSLVDMLSRFDLDLQEKVLLAIKSLLKLSSTEATDFESCD 360
Query: 361 LSSVLYRLGVQLEELPSEEQKEYAGEVDDLRREVQILFQDKLKEGTKTAL 410
LSSVLYRLGVQLEELPSEEQKEYAGEVDDLRREVQILFQDKLKEGTKTAL
Sbjct: 361 LSSVLYRLGVQLEELPSEEQKEYAGEVDDLRREVQILFQDKLKEGTKTAL 410
>Os03g0271400 Armadillo-like helical domain containing protein
Length = 384
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 129/259 (49%), Gaps = 20/259 (7%)
Query: 84 FAGGFGSLDSMLQWAIGNSDPDKLKEQAEGVQKLSADELLKRRMEIKELMEKLKMPSDAD 143
AG S +L+W++ +D + ++ E ++R M + + +M A
Sbjct: 1 MAGDRLSWSGLLKWSLSYADGTRPSRAISEEERRWLAEAVERHMMVDVVS---RMREIAL 57
Query: 144 LMKIAIADLNNSSISLEDRQRALQELLILVEPIDNANDLDKLGGLVAVIQDLNNANEEIR 203
LM ++ L I+ +D + L EL + VE ID ANDL +GGLV VI+ L N+N IR
Sbjct: 58 LMSTPLSVLEAHGITPDDIEGLLAELQVHVESIDMANDLHSVGGLVPVIKYLRNSNARIR 117
Query: 204 TTSAWVLGKASQNNALVQNQIL---GYGALARLVKMGYATSAEEAT---KALYAISALVR 257
+A V+ QNN Q ++ G+ L + TS + T KAL A+S+L+R
Sbjct: 118 ARAADVVTTVVQNNPTSQQLVMEASGFDPL-----LSNFTSDPDLTARIKALGALSSLIR 172
Query: 258 DNINGQEAFHSENGSAMLQHILASNSVDVRLQKKAVFLVTDLADFQLNSGNSGLPFLSDR 317
+N G AF NG A L+ L S S R Q+KA+ +L ++ L+ +SG +
Sbjct: 173 NNKPGVSAFRLANGYAGLRDALTSES--ARFQRKAL----NLTNYLLSESHSGCSVFAQL 226
Query: 318 IFLKSLVDMLSRFDLDLQE 336
F + ++ ++S DL ++E
Sbjct: 227 GFPRLMMHLVSSDDLGVRE 245
>Os03g0822700 Armadillo-like helical domain containing protein
Length = 379
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 109/221 (49%), Gaps = 25/221 (11%)
Query: 86 GGFGSLDSMLQWAIGNSD----PDKLKEQ-----AEGVQKLSADELLKRRMEIKELMEKL 136
GG + +L+W++ + D P L E+ E +Q + D ++KR EI ++M
Sbjct: 5 GGGPDWNGLLKWSLAHGDGTAKPRSLSEEDKKWFMEAMQANTMD-VVKRMKEITQVM--- 60
Query: 137 KMPSDADLMKIAIADLNNSSISLEDRQRALQELLILVEPIDNANDLDKLGGLVAVIQDLN 196
K P D L + ++ E+ + L EL VE ID ANDL +GGL ++ L
Sbjct: 61 KTPDDV---------LQSQGVTPENIEDMLDELQEHVESIDMANDLHSIGGLDPLLGYLK 111
Query: 197 NANEEIRTTSAWVLGKASQNNALVQNQILGYGALARLV-KMGYATSAEEATKALYAISAL 255
N++ IR +A V+ QNN Q ++ L L+ S TKAL AIS+L
Sbjct: 112 NSHAGIRAKAAEVVSTIVQNNPKSQQLVMESNGLEPLLTNFSSDASTNSRTKALGAISSL 171
Query: 256 VRDNINGQEAFHSENGSAMLQHILASNSVDVRLQKKAVFLV 296
+R N G AF NG + L+ L S+ D RLQ+KA+ L+
Sbjct: 172 IRHNQPGVAAFRLGNGYSALRDALGSD--DARLQRKALHLL 210
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,408,873
Number of extensions: 357807
Number of successful extensions: 959
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 954
Number of HSP's successfully gapped: 3
Length of query: 410
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 307
Effective length of database: 11,657,759
Effective search space: 3578932013
Effective search space used: 3578932013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)