FiT-DB / Search/ Help/ Sample detail

Os09g0512700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0137) R2 : 0.0341
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.115 (0.0288) R2dN8 : 0.044 R2N8 : 0.0341
σ : 0.257
deviance : 30.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.69 0.224 10.2 -0.136 0.267 -0.194 0.166 0.537 -0.0636 2.43 10.06 1471 -- --
22.93 0.223 10.2 -0.231 0.305 -0.231 0.134 -- -0.087 1.73 10.29 1255 -- --
22.79 0.222 10.2 -0.137 0.269 -0.193 -- 0.542 -0.0632 2.34 10.06 1469 -- --
22.92 0.223 10.2 -0.228 0.316 -0.229 -- -- -0.0922 1.5 10.28 1229 -- --
25.34 0.234 10.2 -0.172 -- -0.347 -- 0.543 -0.0555 -- 10.03 1790 -- --
24.02 0.23 10.2 -0.275 0.273 -- 0.122 -- -0.151 2.36 -- -- -- --
24.07 0.23 10.2 -0.279 0.272 -- -- -- -0.152 2.29 -- -- -- --
24.78 0.232 10.2 -0.244 -- -0.373 -- -- -0.0621 -- 3.97 1781 -- --
24.23 0.229 10.2 -- 0.313 -0.234 -- -- -0.0929 1.4 10.25 1229 -- --
28.48 0.249 10.2 -0.267 -- -- -- -- -0.145 -- -- -- -- --
26.12 0.239 10.2 -- 0.267 -- -- -- -0.121 2.27 -- -- -- --
24.79 0.232 10.2 -- -- -0.298 -- -- -0.0907 -- 10.26 326 -- --
30.36 0.257 10.2 -- -- -- -- -- -0.115 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.68 atmosphere 1005 270 > th dose independent rect. 22 8
16 21.21 atmosphere 1005 10 > th dose independent rect. 23 9
35 21.53 atmosphere 1005 270 > th dose independent sin 10 NA
47 21.66 atmosphere 1005 10 < th dose independent rect. 19 14
49 21.68 atmosphere 1005 270 < th dose independent rect. 18 14
63 21.76 radiation 10 43200 < th dose dependent rect. 19 8
92 21.86 atmosphere 1005 270 < th dose independent rect. 23 8
109 21.92 atmosphere 1005 270 < th dose independent sin 11 NA
130 21.97 atmosphere 1005 10 < th dose independent sin 8 NA
155 22.02 atmosphere 1000 270 > th dose dependent rect. 22 8
172 22.06 atmosphere 1005 10 < th dose independent rect. 24 9
179 22.06 radiation 20 1440 < th dose dependent rect. 11 1
205 22.11 radiation 10 1440 > th dose independent rect. 9 4
225 22.15 radiation 10 1440 > th dose independent rect. 10 2
259 22.18 radiation 10 1440 < th dose dependent rect. 9 6
299 22.24 humidity 70 30 > th dose independent rect. 7 16
332 22.28 atmosphere 1005 270 > th dose independent rect. 22 18
346 22.30 atmosphere 1005 270 > th dose independent rect. 13 18
353 22.31 humidity 50 30 > th dose dependent rect. 7 16
376 22.34 atmosphere 1005 720 < th dose independent rect. 19 7
410 22.37 humidity 90 4320 > th dose independent rect. 7 1
417 22.37 radiation 10 1440 < th dose dependent rect. 9 11
428 22.38 wind 3 14400 > th dose independent rect. 22 1
477 22.41 wind 3 14400 < th dose independent rect. 22 1
550 22.44 radiation 1 43200 < th dose dependent rect. 19 5
557 22.44 radiation 20 90 < th dose dependent rect. 7 15
587 22.46 atmosphere 1005 30 > th dose independent rect. 14 18
601 22.47 radiation 10 270 < th dose independent rect. 9 12
642 22.49 atmosphere 1015 10 < th dose dependent rect. 18 16
644 22.50 atmosphere 1005 720 < th dose independent rect. 23 2
669 22.51 atmosphere 1005 30 > th dose independent rect. 23 18
673 22.51 radiation 10 1440 < th dose dependent sin 20 NA
674 22.51 radiation 20 270 < th dose dependent sin 22 NA
676 22.51 radiation 20 270 < th dose dependent rect. 9 12
681 22.52 wind 1 1440 < th dose independent rect. 6 4
713 22.53 radiation 20 1440 < th dose independent rect. 11 1
736 22.54 radiation 10 1440 > th dose independent sin 21 NA
738 22.54 humidity 90 4320 < th dose independent rect. 7 1
752 22.54 radiation 10 1440 < th dose dependent rect. 13 2
760 22.55 radiation 10 270 < th dose independent sin 21 NA
762 22.55 atmosphere 1005 720 < th dose independent rect. 19 2
764 22.55 wind 1 1440 < th dose independent rect. 6 6
769 22.55 radiation 20 90 < th dose independent rect. 7 15
775 22.55 radiation 1 90 > th dose independent rect. 10 21
781 22.55 humidity 90 90 < th dose dependent rect. 10 8
782 22.55 atmosphere 1005 10 > th dose dependent rect. 24 8
817 22.56 humidity 70 30 > th dose independent rect. 7 23
819 22.56 radiation 1 1440 > th dose dependent rect. 11 1
830 22.56 radiation 20 270 < th dose dependent rect. 5 16
865 22.58 radiation 20 1440 < th dose independent rect. 11 3
882 22.58 atmosphere 995 10 > th dose dependent rect. 23 8
905 22.59 radiation 10 1440 < th dose independent rect. 11 6
907 22.59 humidity 70 90 < th dose independent rect. 10 8
908 22.59 radiation 10 1440 < th dose independent rect. 9 8
919 22.59 radiation 1 90 < th dose independent rect. 5 18
991 22.61 radiation 10 1440 < th dose independent rect. 13 3
992 22.61 wind 1 1440 > th dose independent rect. 6 4