Os03g0822700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os03g0822700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.93 | 0.401 | 11.2 | -0.584 | 0.93 | 0.916 | 0.757 | 0.475 | -0.375 | 8.78 | 24.1 | 10 | -- | -- |
| 73.05 | 0.398 | 11.2 | -0.642 | 0.927 | 0.953 | 0.804 | -- | -0.39 | 8.76 | 24.12 | 10 | -- | -- |
| 74.66 | 0.402 | 11.2 | -0.523 | 0.931 | 0.921 | -- | 0.792 | -0.366 | 8.63 | 24.1 | 6 | -- | -- |
| 75.01 | 0.403 | 11.2 | -0.628 | 0.932 | 0.997 | -- | -- | -0.401 | 8.53 | 24.1 | 10 | -- | -- |
| 121.1 | 0.515 | 11.3 | -0.545 | -- | 1.05 | -- | 0.849 | -0.413 | -- | 20.04 | 3 | -- | -- |
| 86.6 | 0.436 | 11.2 | -0.502 | 0.984 | -- | 0.978 | -- | -0.28 | 10.3 | -- | -- | -- | -- |
| 90.37 | 0.445 | 11.2 | -0.465 | 0.983 | -- | -- | -- | -0.279 | 10.1 | -- | -- | -- | -- |
| 121.45 | 0.513 | 11.3 | -0.715 | -- | 1.18 | -- | -- | -0.463 | -- | 17.7 | 2 | -- | -- |
| 84.93 | 0.432 | 11.2 | -- | 0.923 | 0.841 | -- | -- | -0.307 | 8.88 | 24.22 | 9 | -- | -- |
| 148.9 | 0.57 | 11.2 | -0.478 | -- | -- | -- | -- | -0.28 | -- | -- | -- | -- | -- |
| 96.06 | 0.458 | 11.2 | -- | 0.985 | -- | -- | -- | -0.227 | 10.2 | -- | -- | -- | -- |
| 133.28 | 0.539 | 11.3 | -- | -- | 0.938 | -- | -- | -0.309 | -- | 24.22 | 9 | -- | -- |
| 154.93 | 0.581 | 11.2 | -- | -- | -- | -- | -- | -0.227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.36 | temperature | 25 | 10 | > th | dose dependent | sin | 7 | NA |
| 22 | 64.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 7 |
| 30 | 64.56 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 16 |
| 38 | 64.91 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 40 | 65.06 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 5 |
| 43 | 65.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 45 | 65.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 56 | 65.46 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 12 |
| 59 | 65.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 15 |
| 61 | 65.60 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 10 |
| 63 | 65.68 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 66 | 65.72 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 8 |
| 95 | 66.15 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 16 |
| 122 | 66.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 126 | 66.65 | temperature | 25 | 90 | > th | dose independent | rect. | 3 | 8 |
| 141 | 66.90 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 3 |
| 157 | 67.18 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 15 |
| 162 | 67.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 166 | 67.40 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 5 |
| 187 | 67.73 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 5 |
| 209 | 67.94 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 2 |
| 221 | 68.07 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 12 |
| 232 | 68.22 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 16 |
| 238 | 68.28 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 10 |
| 247 | 68.36 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 19 |
| 256 | 68.45 | radiation | 10 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 294 | 68.74 | radiation | 10 | 90 | < th | dose dependent | sin | 4 | NA |
| 357 | 69.12 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 378 | 69.18 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 417 | 69.36 | temperature | 30 | 30 | < th | dose independent | rect. | 2 | 17 |
| 460 | 69.58 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 463 | 69.61 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 10 |
| 471 | 69.66 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 472 | 69.68 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 11 | 8 |
| 504 | 69.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 538 | 70.05 | temperature | 25 | 90 | > th | dose independent | sin | 6 | NA |
| 552 | 70.12 | temperature | 25 | 90 | > th | dose independent | rect. | 19 | 16 |
| 584 | 70.29 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 644 | 70.57 | humidity | 80 | 10 | > th | dose dependent | sin | 3 | NA |
| 693 | 70.78 | temperature | 25 | 90 | < th | dose independent | sin | 6 | NA |
| 695 | 70.78 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 712 | 70.85 | humidity | 70 | 10 | > th | dose dependent | rect. | 24 | 19 |
| 721 | 70.89 | humidity | 70 | 10 | > th | dose dependent | rect. | 2 | 17 |
| 734 | 70.94 | temperature | 30 | 90 | < th | dose independent | rect. | 11 | 8 |
| 748 | 71.00 | radiation | 1 | 90 | > th | dose dependent | sin | 7 | NA |
| 771 | 71.06 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 798 | 71.18 | humidity | 80 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 809 | 71.24 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 812 | 71.26 | temperature | 25 | 30 | < th | dose independent | rect. | 2 | 6 |
| 820 | 71.29 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 835 | 71.34 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 11 | 8 |
| 840 | 71.35 | humidity | 80 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 874 | 71.46 | radiation | 10 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 940 | 71.59 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 960 | 71.65 | radiation | 1 | 270 | < th | dose independent | sin | 8 | NA |
| 984 | 71.70 | radiation | 1 | 270 | > th | dose independent | sin | 8 | NA |
| 997 | 71.72 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 6 | 20 |