BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0822700 Os03g0822700|AK101448
(379 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0822700 Armadillo-like helical domain containing protein 721 0.0
Os03g0271400 Armadillo-like helical domain containing protein 410 e-115
Os09g0512700 Armadillo-like helical domain containing protein 84 2e-16
>Os03g0822700 Armadillo-like helical domain containing protein
Length = 379
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/368 (97%), Positives = 357/368 (97%)
Query: 1 MAKDGGGPDWNGLLKWSLAHGDGTAKPRSLSEEDKKWFMEAMQANTMDVVKRMKEITQVM 60
MAKDGGGPDWNGLLKWSLAHGDGTAKPRSLSEEDKKWFMEAMQANTMDVVKRMKEITQVM
Sbjct: 1 MAKDGGGPDWNGLLKWSLAHGDGTAKPRSLSEEDKKWFMEAMQANTMDVVKRMKEITQVM 60
Query: 61 KTPDDVLQSQGVTPENIEDMLDELQEHVESIDMANDLHSIGGLDPLLGYLKNSHAGIRAK 120
KTPDDVLQSQGVTPENIEDMLDELQEHVESIDMANDLHSIGGLDPLLGYLKNSHAGIRAK
Sbjct: 61 KTPDDVLQSQGVTPENIEDMLDELQEHVESIDMANDLHSIGGLDPLLGYLKNSHAGIRAK 120
Query: 121 AAEVVSTIVQNNPKSQQLVMESNGLEPLLTNFSSDASTNSRTKALGAISSLIRHNQPGVA 180
AAEVVSTIVQNNPKSQQLVMESNGLEPLLTNFSSDASTNSRTKALGAISSLIRHNQPGVA
Sbjct: 121 AAEVVSTIVQNNPKSQQLVMESNGLEPLLTNFSSDASTNSRTKALGAISSLIRHNQPGVA 180
Query: 181 AFRLGNGYSALRDALGSDDARLQRKALHLLQYLLHDNKADRSVATELGLPKLMMHLASSD 240
AFRLGNGYSALRDALGSDDARLQRKALHLLQYLLHDNKADRSVATELGLPKLMMHLASSD
Sbjct: 181 AFRLGNGYSALRDALGSDDARLQRKALHLLQYLLHDNKADRSVATELGLPKLMMHLASSD 240
Query: 241 DSGVRXXXXXXXXXXXRDNTSGAGNVLPDQDKLKDVLKSRIEGISTMDADDLSAHREERQ 300
DSGVR RDNTSGAGNVLPDQDKLKDVLKSRIEGISTMDADDLSAHREERQ
Sbjct: 241 DSGVREAALGGLLELARDNTSGAGNVLPDQDKLKDVLKSRIEGISTMDADDLSAHREERQ 300
Query: 301 LVDSLWKECYNEPSSLREKGLVVLPGEDAPQQPPPDVVGSMFEPPLRAWAASRPPPKEDS 360
LVDSLWKECYNEPSSLREKGLVVLPGEDAPQQPPPDVVGSMFEPPLRAWAASRPPPKEDS
Sbjct: 301 LVDSLWKECYNEPSSLREKGLVVLPGEDAPQQPPPDVVGSMFEPPLRAWAASRPPPKEDS 360
Query: 361 ESESAKKD 368
ESESAKKD
Sbjct: 361 ESESAKKD 368
>Os03g0271400 Armadillo-like helical domain containing protein
Length = 384
Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/353 (57%), Positives = 266/353 (75%), Gaps = 3/353 (0%)
Query: 10 WNGLLKWSLAHGDGTAKPRSLSEEDKKWFMEAMQANTM-DVVKRMKEITQVMKTPDDVLQ 68
W+GLLKWSL++ DGT R++SEE+++W EA++ + M DVV RM+EI +M TP VL+
Sbjct: 8 WSGLLKWSLSYADGTRPSRAISEEERRWLAEAVERHMMVDVVSRMREIALLMSTPLSVLE 67
Query: 69 SQGVTPENIEDMLDELQEHVESIDMANDLHSIGGLDPLLGYLKNSHAGIRAKAAEVVSTI 128
+ G+TP++IE +L ELQ HVESIDMANDLHS+GGL P++ YL+NS+A IRA+AA+VV+T+
Sbjct: 68 AHGITPDDIEGLLAELQVHVESIDMANDLHSVGGLVPVIKYLRNSNARIRARAADVVTTV 127
Query: 129 VQNNPKSQQLVMESNGLEPLLTNFSSDASTNSRTKALGAISSLIRHNQPGVAAFRLGNGY 188
VQNNP SQQLVME++G +PLL+NF+SD +R KALGA+SSLIR+N+PGV+AFRL NGY
Sbjct: 128 VQNNPTSQQLVMEASGFDPLLSNFTSDPDLTARIKALGALSSLIRNNKPGVSAFRLANGY 187
Query: 189 SALRDALGSDDARLQRKALHLLQYLLHDNKADRSVATELGLPKLMMHLASSDDSGVRXXX 248
+ LRDAL S+ AR QRKAL+L YLL ++ + SV +LG P+LMMHL SSDD GVR
Sbjct: 188 AGLRDALTSESARFQRKALNLTNYLLSESHSGCSVFAQLGFPRLMMHLVSSDDLGVREAA 247
Query: 249 XXXXXXXXRDNTSGAGNVLPDQDKLKDVLKSRIEGISTMDADDLSAHREERQLVDSLWKE 308
RD T G+ ++L D D+L+ +L++RIE I M +DL A REERQLVDSLW
Sbjct: 248 LGGLLELARDTTLGSRSLLADHDRLRRLLQARIERIRMMAPEDLDAAREERQLVDSLWIT 307
Query: 309 CYNEPSSLREKGLVVLPGEDAPQQPPPDVVGSMFEPPLRAWAASRPPPKEDSE 361
CY+EPS+L +GL+VLPGE+ +Q PPDV G FE PLR +A R P E S+
Sbjct: 308 CYHEPSTLHVEGLLVLPGEECFEQ-PPDVAGRFFE-PLRRSSARRAPSNERSD 358
>Os09g0512700 Armadillo-like helical domain containing protein
Length = 410
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 109/221 (49%), Gaps = 25/221 (11%)
Query: 5 GGGPDWNGLLKWSLAHGDGTAKPRSLSEEDKKWFMEAMQANTMD-VVKRMKEITQVM--- 60
GG + +L+W++ + D P L E+ E +Q + D ++KR EI ++M
Sbjct: 86 GGFGSLDSMLQWAIGNSD----PDKLKEQ-----AEGVQKLSADELLKRRMEIKELMEKL 136
Query: 61 KTPDDV---------LQSQGVTPENIEDMLDELQEHVESIDMANDLHSIGGLDPLLGYLK 111
K P D L + ++ E+ + L EL VE ID ANDL +GGL ++ L
Sbjct: 137 KMPSDADLMKIAIADLNNSSISLEDRQRALQELLILVEPIDNANDLDKLGGLVAVIQDLN 196
Query: 112 NSHAGIRAKAAEVVSTIVQNNPKSQQLVMESNGLEPLLTNFSSDASTNSRTKALGAISSL 171
N++ IR +A V+ QNN Q ++ L L+ S TKAL AIS+L
Sbjct: 197 NANEEIRTTSAWVLGKASQNNALVQNQILGYGALARLV-KMGYATSAEEATKALYAISAL 255
Query: 172 IRHNQPGVAAFRLGNGYSALRDALGSD--DARLQRKALHLL 210
+R N G AF NG + L+ L S+ D RLQ+KA+ L+
Sbjct: 256 VRDNINGQEAFHSENGSAMLQHILASNSVDVRLQKKAVFLV 296
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.129 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,637,041
Number of extensions: 582370
Number of successful extensions: 1759
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1754
Number of HSP's successfully gapped: 3
Length of query: 379
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 276
Effective length of database: 11,657,759
Effective search space: 3217541484
Effective search space used: 3217541484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)