BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0822700 Os03g0822700|AK101448
(379 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G09350.1 | chr3:2871216-2873109 FORWARD LENGTH=364 482 e-136
AT3G53800.1 | chr3:19930942-19932719 FORWARD LENGTH=364 410 e-115
AT5G02150.1 | chr5:424481-426068 REVERSE LENGTH=325 387 e-108
AT3G51980.1 | chr3:19285811-19287502 REVERSE LENGTH=383 99 4e-21
>AT3G09350.1 | chr3:2871216-2873109 FORWARD LENGTH=364
Length = 363
Score = 482 bits (1240), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/353 (66%), Positives = 282/353 (79%), Gaps = 5/353 (1%)
Query: 1 MAKDGGGPDWNGLLKWSLAHGDGTAKPRSLSEEDKKWFMEAMQANTMDVVKRMKEITQVM 60
MAKDG P+W+GLLKWSL+H DGT R LSEED+KWFMEAMQ+ T+DVVKRMKEIT VM
Sbjct: 1 MAKDG--PNWDGLLKWSLSHADGTRPTRQLSEEDRKWFMEAMQSQTVDVVKRMKEITLVM 58
Query: 61 KTPDDVLQSQGVTPENIEDMLDELQEHVESIDMANDLHSIGGLDPLLGYLKNSHAGIRAK 120
+TP+ VL GVTPE+I+D+LDELQEHVESIDMANDLHSIGGL PLL +LKNSHA IRAK
Sbjct: 59 QTPEQVLVEHGVTPEDIQDLLDELQEHVESIDMANDLHSIGGLVPLLSFLKNSHANIRAK 118
Query: 121 AAEVVSTIVQNNPKSQQLVMESNGLEPLLTNFSSDASTNSRTKALGAISSLIRHNQPGVA 180
AA+VVSTIVQNNP+SQ+LVME+N LE LL+NF+SD ++RT+ALGAISSLIRHN+PGV
Sbjct: 119 AADVVSTIVQNNPRSQELVMETNALESLLSNFTSDTDIHARTQALGAISSLIRHNKPGVT 178
Query: 181 AFRLGNGYSALRDALGSDDARLQRKALHLLQYLLHDNKADRSVATELGLPKLMMHLASSD 240
AF+L NGY+ LRDAL SD R QRKAL+LLQYLL ++ +DRS+AT LG P++MMHLASSD
Sbjct: 179 AFKLANGYAGLRDALASDSVRFQRKALNLLQYLLQEDDSDRSIATGLGFPRVMMHLASSD 238
Query: 241 DSGVRXXXXXXXXXXXRDNTSGAGNVLPDQDKLKDVLKSRIEGISTMDADDLSAHREERQ 300
D+ +R R+ G+ ++ +KL+ +L+ RI+GI+ M +DL +EERQ
Sbjct: 239 DAEIREAALRGLLELSREKNDGSSSIDKSDEKLRQLLEERIKGITLMSQEDLETVKEERQ 298
Query: 301 LVDSLWKECYNEPSSLREKGLVVLPGEDAPQQPPPDVVGSMFEPPLRAWAASR 353
LVD LW CYNEPSSLREKGLVVLPGEDA PPDV +FEPPLRA AA+R
Sbjct: 299 LVDLLWSICYNEPSSLREKGLVVLPGEDA---LPPDVASKLFEPPLRASAANR 348
>AT3G53800.1 | chr3:19930942-19932719 FORWARD LENGTH=364
Length = 363
Score = 410 bits (1054), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/360 (58%), Positives = 263/360 (73%), Gaps = 9/360 (2%)
Query: 5 GGGPDWNGLLKWSLAHGDGTAKPRSLSEEDKKWFMEAMQANTMDVVKRMKEITQVMKTPD 64
GP+W+GLLKWSL+H DG + +SEED++WF+EAMQA+T+D + RMK I+Q+MK P+
Sbjct: 3 NNGPNWDGLLKWSLSHSDGASSSSRISEEDRQWFVEAMQAHTIDSISRMKVISQIMKMPE 62
Query: 65 DVLQSQGVTPENIEDMLDELQEHVESIDMANDLHSIGGLDPLLGYLKNSHAGIRAKAAEV 124
VL++QGVTP+++E ML ELQEHVESID+ANDLHSIGGL PLL YLKNS+A IRAK+A+V
Sbjct: 63 QVLEAQGVTPDDLEGMLAELQEHVESIDLANDLHSIGGLVPLLSYLKNSNAKIRAKSADV 122
Query: 125 VSTIVQNNPKSQQLVMESNGLEPLLTNFSSDASTNSRTKALGAISSLIRHNQPGVAAFRL 184
++T+VQNNP+SQQLVME+NG EPLLTNF +D RTKALGAISSLIR+NQPG+ AFRL
Sbjct: 123 LTTVVQNNPRSQQLVMEANGFEPLLTNFIADPDIRVRTKALGAISSLIRNNQPGITAFRL 182
Query: 185 GNGYSALRDALGSDDARLQRKALHLLQYLLHDNKADRSVATELGLPKLMMHLASSDDSGV 244
NGY+ LRDAL SD R QRKAL+LL YLL ++ +D + +LG P++M+HLAS+ D V
Sbjct: 183 ANGYAGLRDALVSDTVRFQRKALNLLHYLLQESNSDCKIVRDLGFPRIMIHLASNQDFEV 242
Query: 245 RXXXXXXXXXXXRDNTSGAGNVLPDQDKLKDVLKSRIEGISTMDADDLSAHREERQLVDS 304
R R+ + N+ L+ +L+ R I M +DL A REERQLVDS
Sbjct: 243 REFALRGLLELAREES--VRNLDRGDVNLRQLLEERTRRIIVMSDEDLCAAREERQLVDS 300
Query: 305 LWKECYNEPSSLREKGLVVLPGEDAPQQPPPDVVGSMFEPPLRAWAASRPPPKEDSESES 364
LW CY+EPS LRE+GLV LP +D + PDVV FEPPLRAWAA R D SES
Sbjct: 301 LWTVCYDEPSLLRERGLVYLPSDD---ELAPDVVRDRFEPPLRAWAARR----HDETSES 353
>AT5G02150.1 | chr5:424481-426068 REVERSE LENGTH=325
Length = 324
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/326 (59%), Positives = 244/326 (74%), Gaps = 12/326 (3%)
Query: 1 MAKDGGGPDWNGLLKWSLAHGDGTAKPRSLSEEDKKWFMEAMQANTMDVVKRMKEITQVM 60
MAKDG P+W+GLLKWSL+H DGT LSEED+KWF EAMQ+ T+DVVKR+KEITQV+
Sbjct: 1 MAKDG--PNWDGLLKWSLSHSDGTRPTCQLSEEDRKWFAEAMQSQTVDVVKRLKEITQVL 58
Query: 61 KTPDDVLQSQGVTPENIEDMLDELQEHVESIDMANDLHSIGGLDPLLGYLKNSHAGIRAK 120
+TP VL++ VTP++IE +LDELQEHVESIDMANDLHS+GGL PLLGYLKNS+A IRAK
Sbjct: 59 QTPQQVLEAHEVTPQDIEGLLDELQEHVESIDMANDLHSVGGLVPLLGYLKNSNANIRAK 118
Query: 121 AAEVVSTIVQNNPKSQQLVMESNGLEPLLTNFSSDASTNSRTKALGAISSLIRHNQPGVA 180
+A+VVSTIV+NNP+SQ+ VME+NGLE LL F+SD +SRT+ALGAISSLIR+N+PG+
Sbjct: 119 SADVVSTIVENNPRSQESVMEANGLESLLLRFTSDTDMHSRTQALGAISSLIRNNKPGIT 178
Query: 181 AFRLGNGYSALRDALGSDDARLQRKALHLLQYLLHDNKADRSVATELGLPKLMMHLASSD 240
FR+ NGYS L+DAL +D R QRKAL+LL YLL +N +D +A E GL LMMHL SS
Sbjct: 179 GFRIANGYSGLKDALETDSVRFQRKALNLLHYLLQENDSDSDIAIEFGLHHLMMHLVSSF 238
Query: 241 DSGVRXXXXX---XXXXXXRDNTSGAGNVLPDQDKLKDVLKSRIEGIS-------TMDAD 290
D+ VR +D ++ +++ ++L+ +LK RI+ IS M +
Sbjct: 239 DADVREAALRGLLELVKARKDCSTCGSSIVKGDERLRQILKDRIKAISRVKAMSLFMSQE 298
Query: 291 DLSAHREERQLVDSLWKECYNEPSSL 316
DLSA +EERQL+DSLW +NEPSSL
Sbjct: 299 DLSAAKEERQLLDSLWTTIFNEPSSL 324
>AT3G51980.1 | chr3:19285811-19287502 REVERSE LENGTH=383
Length = 382
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 113/221 (51%), Gaps = 23/221 (10%)
Query: 4 DGGGPDWNGLLKWSLAHGDGTAKPRSLSEEDK---KWFMEAMQANTMDVVKRMKEITQVM 60
DGG +G+L W++ H D P +L E K K ++ +Q ++ +KE+ + +
Sbjct: 59 DGGFSSLDGMLHWAIGHSD----PATLKEAAKDAEKMSLDELQKRQLE----LKELVEKL 110
Query: 61 KTPD---------DVLQSQGVTPENIEDMLDELQEHVESIDMANDLHSIGGLDPLLGYLK 111
K P D L + ++ E+ L EL VE ID ANDL GGL + G L
Sbjct: 111 KMPSNAKLMQIAIDDLNNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELN 170
Query: 112 NSHAGIRAKAAEVVSTIVQNNPKSQQLVMESNGLEPLLTNFSSDASTNSRTKALGAISSL 171
+ +R AA V+ QNNP Q+ V+E L L+ +S +ST KAL A+S+L
Sbjct: 171 HDDTEVRKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNS-SSTEEAVKALFAVSAL 229
Query: 172 IRHNQPGVAAFRLGNGYSALRDAL--GSDDARLQRKALHLL 210
IR+N G F +GY LRD + GS D +L+RKA+ L+
Sbjct: 230 IRNNIAGQDLFFAAHGYIMLRDVMNNGSLDMKLRRKAVFLV 270
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.129 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,277,991
Number of extensions: 344822
Number of successful extensions: 1156
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1153
Number of HSP's successfully gapped: 4
Length of query: 379
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 279
Effective length of database: 8,364,969
Effective search space: 2333826351
Effective search space used: 2333826351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 112 (47.8 bits)